Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1046 and Shewana3_1047 are separated by 82 nucleotides Shewana3_1047 and Shewana3_1048 are separated by 17 nucleotides
Shewana3_1046: Shewana3_1046 - phosphoserine phosphatase (RefSeq), at 1,223,734 to 1,224,726
_1046
Shewana3_1047: Shewana3_1047 - hypothetical protein (RefSeq), at 1,224,809 to 1,225,810
_1047
Shewana3_1048: Shewana3_1048 - type IV pilus assembly PilZ (RefSeq), at 1,225,828 to 1,228,200
_1048
Position (kb)
1224
1225
1226 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1223.936 kb on - strand, within Shewana3_1046 at 1224.044 kb on + strand, within Shewana3_1046 at 1224.060 kb on - strand, within Shewana3_1046 at 1224.308 kb on - strand, within Shewana3_1046 at 1224.397 kb on - strand, within Shewana3_1046 at 1224.521 kb on - strand, within Shewana3_1046 at 1224.521 kb on - strand, within Shewana3_1046 at 1224.521 kb on - strand, within Shewana3_1046 at 1224.541 kb on + strand, within Shewana3_1046 at 1224.686 kb on + strand at 1224.905 kb on - strand at 1225.046 kb on + strand, within Shewana3_1047 at 1225.089 kb on - strand, within Shewana3_1047 at 1225.110 kb on + strand, within Shewana3_1047 at 1225.110 kb on + strand, within Shewana3_1047 at 1225.423 kb on - strand, within Shewana3_1047 at 1225.587 kb on - strand, within Shewana3_1047 at 1225.604 kb on + strand, within Shewana3_1047 at 1225.612 kb on - strand, within Shewana3_1047 at 1225.692 kb on + strand, within Shewana3_1047 at 1225.752 kb on + strand at 1225.790 kb on - strand at 1225.844 kb on + strand at 1225.844 kb on + strand at 1225.854 kb on + strand at 1225.884 kb on + strand at 1226.071 kb on - strand, within Shewana3_1048 at 1226.313 kb on + strand, within Shewana3_1048 at 1226.410 kb on - strand, within Shewana3_1048 at 1226.497 kb on + strand, within Shewana3_1048 at 1226.784 kb on + strand, within Shewana3_1048
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 1,223,936 - Shewana3_1046 0.20 +0.1 1,224,044 + Shewana3_1046 0.31 -1.4 1,224,060 - Shewana3_1046 0.33 +1.4 1,224,308 - Shewana3_1046 0.58 -0.3 1,224,397 - Shewana3_1046 0.67 +0.4 1,224,521 - Shewana3_1046 0.79 +0.4 1,224,521 - Shewana3_1046 0.79 -1.2 1,224,521 - Shewana3_1046 0.79 -1.0 1,224,541 + Shewana3_1046 0.81 +1.0 1,224,686 + -1.0 1,224,905 - -2.2 1,225,046 + Shewana3_1047 0.24 -0.8 1,225,089 - Shewana3_1047 0.28 -1.8 1,225,110 + Shewana3_1047 0.30 -0.4 1,225,110 + Shewana3_1047 0.30 -0.1 1,225,423 - Shewana3_1047 0.61 +0.4 1,225,587 - Shewana3_1047 0.78 +2.6 1,225,604 + Shewana3_1047 0.79 -0.8 1,225,612 - Shewana3_1047 0.80 +1.2 1,225,692 + Shewana3_1047 0.88 +1.6 1,225,752 + +0.4 1,225,790 - +0.2 1,225,844 + -0.8 1,225,844 + +0.2 1,225,854 + +0.6 1,225,884 + +0.5 1,226,071 - Shewana3_1048 0.10 -2.5 1,226,313 + Shewana3_1048 0.20 -0.1 1,226,410 - Shewana3_1048 0.25 -0.9 1,226,497 + Shewana3_1048 0.28 -1.8 1,226,784 + Shewana3_1048 0.40 -0.7
Or see this region's nucleotide sequence