Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1039 and Shewana3_1040 are separated by 335 nucleotides Shewana3_1040 and Shewana3_1041 are separated by 414 nucleotides
Shewana3_1039: Shewana3_1039 - nucleoside permease (cytidine, inosine, uridine, or thymidine) (from data) , at 1,215,141 to 1,216,400
_1039
Shewana3_1040: Shewana3_1040 - nucleoside-specific channel-forming protein, Tsx (RefSeq), at 1,216,736 to 1,217,575
_1040
Shewana3_1041: Shewana3_1041 - deoxyribose-phosphate aldolase (RefSeq), at 1,217,990 to 1,218,760
_1041
Position (kb)
1216
1217
1218 Strain fitness (log2 ratio)
-1
0
1
2 at 1215.857 kb on - strand, within Shewana3_1039 at 1215.882 kb on + strand, within Shewana3_1039 at 1215.915 kb on - strand, within Shewana3_1039 at 1215.992 kb on - strand, within Shewana3_1039 at 1216.343 kb on - strand at 1216.510 kb on + strand at 1216.552 kb on - strand at 1217.132 kb on - strand, within Shewana3_1040 at 1217.296 kb on + strand, within Shewana3_1040 at 1217.296 kb on + strand, within Shewana3_1040 at 1217.527 kb on + strand at 1217.817 kb on + strand at 1217.885 kb on + strand at 1218.029 kb on - strand at 1218.045 kb on + strand at 1218.452 kb on - strand, within Shewana3_1041
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 1,215,857 - Shewana3_1039 0.57 +1.2 1,215,882 + Shewana3_1039 0.59 +1.2 1,215,915 - Shewana3_1039 0.61 +2.2 1,215,992 - Shewana3_1039 0.68 +1.4 1,216,343 - +0.4 1,216,510 + -0.2 1,216,552 - +0.4 1,217,132 - Shewana3_1040 0.47 -0.8 1,217,296 + Shewana3_1040 0.67 +1.2 1,217,296 + Shewana3_1040 0.67 +0.7 1,217,527 + +0.4 1,217,817 + +0.9 1,217,885 + +0.4 1,218,029 - +2.2 1,218,045 + +0.1 1,218,452 - Shewana3_1041 0.60 +2.6
Or see this region's nucleotide sequence