Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1015

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1014 and Shewana3_1015 are separated by 13 nucleotidesShewana3_1015 and Shewana3_1016 are separated by 29 nucleotides Shewana3_1014: Shewana3_1014 - hypothetical protein (RefSeq), at 1,186,375 to 1,186,908 _1014 Shewana3_1015: Shewana3_1015 - lysozyme (RefSeq), at 1,186,922 to 1,187,437 _1015 Shewana3_1016: Shewana3_1016 - hypothetical protein (RefSeq), at 1,187,467 to 1,188,285 _1016 Position (kb) 1186 1187 1188Strain fitness (log2 ratio) -1 0 1at 1185.943 kb on - strandat 1186.031 kb on + strandat 1186.420 kb on + strandat 1186.520 kb on - strand, within Shewana3_1014at 1186.646 kb on + strand, within Shewana3_1014at 1186.646 kb on + strand, within Shewana3_1014at 1186.654 kb on - strand, within Shewana3_1014at 1186.654 kb on - strand, within Shewana3_1014at 1186.707 kb on + strand, within Shewana3_1014at 1186.748 kb on + strand, within Shewana3_1014at 1186.890 kb on + strandat 1187.111 kb on - strand, within Shewana3_1015at 1187.289 kb on - strand, within Shewana3_1015at 1187.438 kb on + strandat 1187.594 kb on + strand, within Shewana3_1016at 1187.672 kb on - strand, within Shewana3_1016at 1187.751 kb on - strand, within Shewana3_1016at 1187.913 kb on + strand, within Shewana3_1016at 1188.358 kb on + strandat 1188.358 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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1,185,943 - +0.2
1,186,031 + -0.1
1,186,420 + -1.0
1,186,520 - Shewana3_1014 0.27 -0.5
1,186,646 + Shewana3_1014 0.51 -0.3
1,186,646 + Shewana3_1014 0.51 +0.8
1,186,654 - Shewana3_1014 0.52 +1.0
1,186,654 - Shewana3_1014 0.52 +1.2
1,186,707 + Shewana3_1014 0.62 +1.4
1,186,748 + Shewana3_1014 0.70 +0.6
1,186,890 + -0.2
1,187,111 - Shewana3_1015 0.37 -0.8
1,187,289 - Shewana3_1015 0.71 -0.9
1,187,438 + -1.6
1,187,594 + Shewana3_1016 0.16 +0.6
1,187,672 - Shewana3_1016 0.25 -0.5
1,187,751 - Shewana3_1016 0.35 -1.2
1,187,913 + Shewana3_1016 0.54 +1.4
1,188,358 + +0.2
1,188,358 + -0.8

Or see this region's nucleotide sequence