Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0973 and Shewana3_0974 are separated by 11 nucleotides Shewana3_0974 and Shewana3_0975 overlap by 4 nucleotides Shewana3_0975 and Shewana3_0976 are separated by 78 nucleotides Shewana3_0976 and Shewana3_0977 are separated by 468 nucleotides
Shewana3_0973: Shewana3_0973 - endonuclease/exonuclease/phosphatase (RefSeq), at 1,143,851 to 1,144,984
_0973
Shewana3_0974: Shewana3_0974 - hypothetical protein (RefSeq), at 1,144,996 to 1,145,811
_0974
Shewana3_0975: Shewana3_0975 - hypothetical protein (RefSeq), at 1,145,808 to 1,146,689
_0975
Shewana3_0976: Shewana3_0976 - putative lipoprotein (RefSeq), at 1,146,768 to 1,147,220
_0976
Shewana3_0977: Shewana3_0977 - SAM-dependent methyltransferase (RefSeq), at 1,147,689 to 1,148,879
_0977
Position (kb)
1145
1146
1147 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1144.811 kb on + strand, within Shewana3_0973 at 1144.821 kb on + strand, within Shewana3_0973 at 1144.893 kb on + strand at 1144.901 kb on - strand at 1144.933 kb on + strand at 1145.120 kb on + strand, within Shewana3_0974 at 1145.173 kb on + strand, within Shewana3_0974 at 1145.392 kb on + strand, within Shewana3_0974 at 1145.665 kb on - strand, within Shewana3_0974 at 1145.833 kb on + strand at 1146.287 kb on + strand, within Shewana3_0975 at 1146.344 kb on - strand, within Shewana3_0975 at 1146.379 kb on - strand, within Shewana3_0975 at 1146.408 kb on + strand, within Shewana3_0975 at 1146.409 kb on + strand, within Shewana3_0975 at 1146.451 kb on + strand, within Shewana3_0975 at 1146.464 kb on + strand, within Shewana3_0975 at 1146.472 kb on - strand, within Shewana3_0975 at 1146.477 kb on - strand, within Shewana3_0975 at 1146.559 kb on + strand, within Shewana3_0975 at 1146.668 kb on + strand at 1146.698 kb on - strand at 1146.698 kb on - strand at 1146.856 kb on - strand, within Shewana3_0976 at 1146.866 kb on - strand, within Shewana3_0976 at 1146.866 kb on - strand, within Shewana3_0976 at 1146.890 kb on - strand, within Shewana3_0976 at 1146.993 kb on - strand, within Shewana3_0976 at 1146.994 kb on + strand, within Shewana3_0976 at 1147.044 kb on - strand, within Shewana3_0976 at 1147.096 kb on - strand, within Shewana3_0976 at 1147.125 kb on + strand, within Shewana3_0976 at 1147.181 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 1,144,811 + Shewana3_0973 0.85 -1.3 1,144,821 + Shewana3_0973 0.86 +0.1 1,144,893 + +1.0 1,144,901 - -0.9 1,144,933 + -2.2 1,145,120 + Shewana3_0974 0.15 -0.5 1,145,173 + Shewana3_0974 0.22 -1.1 1,145,392 + Shewana3_0974 0.49 -1.0 1,145,665 - Shewana3_0974 0.82 -0.4 1,145,833 + -0.4 1,146,287 + Shewana3_0975 0.54 +0.8 1,146,344 - Shewana3_0975 0.61 -0.6 1,146,379 - Shewana3_0975 0.65 -0.9 1,146,408 + Shewana3_0975 0.68 -0.9 1,146,409 + Shewana3_0975 0.68 +0.3 1,146,451 + Shewana3_0975 0.73 -1.3 1,146,464 + Shewana3_0975 0.74 -0.2 1,146,472 - Shewana3_0975 0.75 -1.2 1,146,477 - Shewana3_0975 0.76 -3.1 1,146,559 + Shewana3_0975 0.85 -2.3 1,146,668 + -0.9 1,146,698 - -3.5 1,146,698 - -1.6 1,146,856 - Shewana3_0976 0.19 -0.1 1,146,866 - Shewana3_0976 0.22 -2.1 1,146,866 - Shewana3_0976 0.22 +0.4 1,146,890 - Shewana3_0976 0.27 -0.4 1,146,993 - Shewana3_0976 0.50 -0.7 1,146,994 + Shewana3_0976 0.50 +0.1 1,147,044 - Shewana3_0976 0.61 -0.4 1,147,096 - Shewana3_0976 0.72 -0.1 1,147,125 + Shewana3_0976 0.79 +0.3 1,147,181 + -0.5
Or see this region's nucleotide sequence