Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0894

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0893 and Shewana3_0894 are separated by 237 nucleotidesShewana3_0894 and Shewana3_0895 are separated by 106 nucleotides Shewana3_0893: Shewana3_0893 - hypothetical protein (RefSeq), at 1,040,010 to 1,040,960 _0893 Shewana3_0894: Shewana3_0894 - diguanylate cyclase with PAS/PAC and GAF sensors (RefSeq), at 1,041,198 to 1,042,646 _0894 Shewana3_0895: Shewana3_0895 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,042,753 to 1,044,645 _0895 Position (kb) 1041 1042 1043Strain fitness (log2 ratio) -3 -2 -1 0 1at 1040.207 kb on + strand, within Shewana3_0893at 1040.429 kb on - strand, within Shewana3_0893at 1040.526 kb on + strand, within Shewana3_0893at 1040.749 kb on - strand, within Shewana3_0893at 1041.110 kb on + strandat 1041.110 kb on + strandat 1041.110 kb on + strandat 1041.110 kb on + strandat 1041.110 kb on - strandat 1041.118 kb on - strandat 1041.118 kb on - strandat 1041.118 kb on - strandat 1041.158 kb on + strandat 1041.178 kb on - strandat 1041.614 kb on + strand, within Shewana3_0894at 1041.672 kb on + strand, within Shewana3_0894at 1042.007 kb on + strand, within Shewana3_0894at 1042.015 kb on - strand, within Shewana3_0894at 1042.027 kb on - strand, within Shewana3_0894at 1042.446 kb on - strand, within Shewana3_0894at 1042.485 kb on - strand, within Shewana3_0894at 1042.915 kb on - strandat 1043.504 kb on + strand, within Shewana3_0895at 1043.542 kb on - strand, within Shewana3_0895

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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1,040,207 + Shewana3_0893 0.21 -0.8
1,040,429 - Shewana3_0893 0.44 -0.3
1,040,526 + Shewana3_0893 0.54 -1.2
1,040,749 - Shewana3_0893 0.78 +0.3
1,041,110 + -1.2
1,041,110 + -1.4
1,041,110 + -0.1
1,041,110 + -1.3
1,041,110 - -2.6
1,041,118 - -0.1
1,041,118 - -0.1
1,041,118 - -1.5
1,041,158 + -0.5
1,041,178 - +0.9
1,041,614 + Shewana3_0894 0.29 -0.8
1,041,672 + Shewana3_0894 0.33 -2.9
1,042,007 + Shewana3_0894 0.56 -0.1
1,042,015 - Shewana3_0894 0.56 -0.2
1,042,027 - Shewana3_0894 0.57 -1.5
1,042,446 - Shewana3_0894 0.86 +0.2
1,042,485 - Shewana3_0894 0.89 -2.0
1,042,915 - -0.4
1,043,504 + Shewana3_0895 0.40 -1.6
1,043,542 - Shewana3_0895 0.42 -1.4

Or see this region's nucleotide sequence