Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0831

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0829 and Shewana3_0830 are separated by 4 nucleotidesShewana3_0830 and Shewana3_0831 are separated by 15 nucleotidesShewana3_0831 and Shewana3_0832 are separated by 257 nucleotides Shewana3_0829: Shewana3_0829 - spermidine synthase (RefSeq), at 958,991 to 960,724 _0829 Shewana3_0830: Shewana3_0830 - hypothetical protein (RefSeq), at 960,729 to 961,628 _0830 Shewana3_0831: Shewana3_0831 - hypothetical protein (RefSeq), at 961,644 to 962,621 _0831 Shewana3_0832: Shewana3_0832 - glutamate-ammonia ligase adenylyltransferase (RefSeq), at 962,879 to 965,743 _0832 Position (kb) 961 962 963Strain fitness (log2 ratio) -3 -2 -1 0 1at 960.685 kb on - strandat 960.726 kb on + strandat 960.943 kb on + strand, within Shewana3_0830at 961.188 kb on - strand, within Shewana3_0830at 961.193 kb on - strand, within Shewana3_0830at 961.332 kb on - strand, within Shewana3_0830at 961.399 kb on + strand, within Shewana3_0830at 961.402 kb on + strand, within Shewana3_0830at 961.414 kb on + strand, within Shewana3_0830at 961.424 kb on - strand, within Shewana3_0830at 961.424 kb on - strand, within Shewana3_0830at 961.498 kb on - strand, within Shewana3_0830at 961.498 kb on - strand, within Shewana3_0830at 961.775 kb on - strand, within Shewana3_0831at 962.346 kb on + strand, within Shewana3_0831at 962.369 kb on - strand, within Shewana3_0831at 962.427 kb on + strand, within Shewana3_0831at 962.439 kb on - strand, within Shewana3_0831at 962.449 kb on + strand, within Shewana3_0831at 962.467 kb on + strand, within Shewana3_0831at 962.509 kb on - strand, within Shewana3_0831at 962.539 kb on - strandat 962.702 kb on + strandat 962.710 kb on - strandat 962.803 kb on + strandat 962.906 kb on - strandat 962.941 kb on + strandat 962.975 kb on - strandat 963.081 kb on - strandat 963.081 kb on - strandat 963.153 kb on - strandat 963.239 kb on + strand, within Shewana3_0832at 963.247 kb on - strand, within Shewana3_0832at 963.249 kb on + strand, within Shewana3_0832at 963.263 kb on + strand, within Shewana3_0832at 963.263 kb on + strand, within Shewana3_0832at 963.279 kb on - strand, within Shewana3_0832at 963.303 kb on + strand, within Shewana3_0832at 963.456 kb on + strand, within Shewana3_0832

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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960,685 - +0.6
960,726 + -1.4
960,943 + Shewana3_0830 0.24 -1.0
961,188 - Shewana3_0830 0.51 -0.4
961,193 - Shewana3_0830 0.52 -2.2
961,332 - Shewana3_0830 0.67 -1.6
961,399 + Shewana3_0830 0.74 +0.2
961,402 + Shewana3_0830 0.75 -1.2
961,414 + Shewana3_0830 0.76 -0.2
961,424 - Shewana3_0830 0.77 -0.1
961,424 - Shewana3_0830 0.77 +0.1
961,498 - Shewana3_0830 0.85 -0.3
961,498 - Shewana3_0830 0.85 -0.4
961,775 - Shewana3_0831 0.13 +0.0
962,346 + Shewana3_0831 0.72 -0.5
962,369 - Shewana3_0831 0.74 +0.3
962,427 + Shewana3_0831 0.80 -2.4
962,439 - Shewana3_0831 0.81 -1.2
962,449 + Shewana3_0831 0.82 -2.0
962,467 + Shewana3_0831 0.84 -1.7
962,509 - Shewana3_0831 0.88 -0.3
962,539 - +0.6
962,702 + +0.7
962,710 - -2.8
962,803 + -0.1
962,906 - -2.6
962,941 + -0.3
962,975 - -2.2
963,081 - -2.2
963,081 - -1.6
963,153 - -2.2
963,239 + Shewana3_0832 0.13 -0.0
963,247 - Shewana3_0832 0.13 +0.5
963,249 + Shewana3_0832 0.13 -0.1
963,263 + Shewana3_0832 0.13 -0.4
963,263 + Shewana3_0832 0.13 -0.9
963,279 - Shewana3_0832 0.14 +0.6
963,303 + Shewana3_0832 0.15 -0.7
963,456 + Shewana3_0832 0.20 -0.3

Or see this region's nucleotide sequence