Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0829 and Shewana3_0830 are separated by 4 nucleotides Shewana3_0830 and Shewana3_0831 are separated by 15 nucleotides Shewana3_0831 and Shewana3_0832 are separated by 257 nucleotides
Shewana3_0829: Shewana3_0829 - spermidine synthase (RefSeq), at 958,991 to 960,724
_0829
Shewana3_0830: Shewana3_0830 - hypothetical protein (RefSeq), at 960,729 to 961,628
_0830
Shewana3_0831: Shewana3_0831 - hypothetical protein (RefSeq), at 961,644 to 962,621
_0831
Shewana3_0832: Shewana3_0832 - glutamate-ammonia ligase adenylyltransferase (RefSeq), at 962,879 to 965,743
_0832
Position (kb)
961
962
963 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 960.685 kb on - strand at 960.726 kb on + strand at 960.943 kb on + strand, within Shewana3_0830 at 961.188 kb on - strand, within Shewana3_0830 at 961.193 kb on - strand, within Shewana3_0830 at 961.332 kb on - strand, within Shewana3_0830 at 961.399 kb on + strand, within Shewana3_0830 at 961.402 kb on + strand, within Shewana3_0830 at 961.414 kb on + strand, within Shewana3_0830 at 961.424 kb on - strand, within Shewana3_0830 at 961.424 kb on - strand, within Shewana3_0830 at 961.498 kb on - strand, within Shewana3_0830 at 961.498 kb on - strand, within Shewana3_0830 at 961.775 kb on - strand, within Shewana3_0831 at 962.346 kb on + strand, within Shewana3_0831 at 962.369 kb on - strand, within Shewana3_0831 at 962.427 kb on + strand, within Shewana3_0831 at 962.439 kb on - strand, within Shewana3_0831 at 962.449 kb on + strand, within Shewana3_0831 at 962.467 kb on + strand, within Shewana3_0831 at 962.509 kb on - strand, within Shewana3_0831 at 962.539 kb on - strand at 962.702 kb on + strand at 962.710 kb on - strand at 962.803 kb on + strand at 962.906 kb on - strand at 962.941 kb on + strand at 962.975 kb on - strand at 963.081 kb on - strand at 963.081 kb on - strand at 963.153 kb on - strand at 963.239 kb on + strand, within Shewana3_0832 at 963.247 kb on - strand, within Shewana3_0832 at 963.249 kb on + strand, within Shewana3_0832 at 963.263 kb on + strand, within Shewana3_0832 at 963.263 kb on + strand, within Shewana3_0832 at 963.279 kb on - strand, within Shewana3_0832 at 963.303 kb on + strand, within Shewana3_0832 at 963.456 kb on + strand, within Shewana3_0832
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 960,685 - +0.6 960,726 + -1.4 960,943 + Shewana3_0830 0.24 -1.0 961,188 - Shewana3_0830 0.51 -0.4 961,193 - Shewana3_0830 0.52 -2.2 961,332 - Shewana3_0830 0.67 -1.6 961,399 + Shewana3_0830 0.74 +0.2 961,402 + Shewana3_0830 0.75 -1.2 961,414 + Shewana3_0830 0.76 -0.2 961,424 - Shewana3_0830 0.77 -0.1 961,424 - Shewana3_0830 0.77 +0.1 961,498 - Shewana3_0830 0.85 -0.3 961,498 - Shewana3_0830 0.85 -0.4 961,775 - Shewana3_0831 0.13 +0.0 962,346 + Shewana3_0831 0.72 -0.5 962,369 - Shewana3_0831 0.74 +0.3 962,427 + Shewana3_0831 0.80 -2.4 962,439 - Shewana3_0831 0.81 -1.2 962,449 + Shewana3_0831 0.82 -2.0 962,467 + Shewana3_0831 0.84 -1.7 962,509 - Shewana3_0831 0.88 -0.3 962,539 - +0.6 962,702 + +0.7 962,710 - -2.8 962,803 + -0.1 962,906 - -2.6 962,941 + -0.3 962,975 - -2.2 963,081 - -2.2 963,081 - -1.6 963,153 - -2.2 963,239 + Shewana3_0832 0.13 -0.0 963,247 - Shewana3_0832 0.13 +0.5 963,249 + Shewana3_0832 0.13 -0.1 963,263 + Shewana3_0832 0.13 -0.4 963,263 + Shewana3_0832 0.13 -0.9 963,279 - Shewana3_0832 0.14 +0.6 963,303 + Shewana3_0832 0.15 -0.7 963,456 + Shewana3_0832 0.20 -0.3
Or see this region's nucleotide sequence