Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0805 and Shewana3_0806 are separated by 57 nucleotides Shewana3_0806 and Shewana3_0807 are separated by 110 nucleotides Shewana3_0807 and Shewana3_0808 are separated by 67 nucleotides
Shewana3_0805: Shewana3_0805 - hypothetical protein (RefSeq), at 928,775 to 929,947
_0805
Shewana3_0806: Shewana3_0806 - peptidase M19, renal dipeptidase (RefSeq), at 930,005 to 931,168
_0806
Shewana3_0807: Shewana3_0807 - Fe-S metabolism associated SufE (RefSeq), at 931,279 to 931,722
_0807
Shewana3_0808: Shewana3_0808 - cysteine desulfurase (RefSeq), at 931,790 to 933,037
_0808
Position (kb)
930
931
932 Strain fitness (log2 ratio)
-2
-1
0
1 at 929.029 kb on + strand, within Shewana3_0805 at 929.066 kb on + strand, within Shewana3_0805 at 929.386 kb on + strand, within Shewana3_0805 at 929.386 kb on + strand, within Shewana3_0805 at 929.891 kb on + strand at 929.891 kb on + strand at 929.891 kb on + strand at 929.899 kb on - strand at 929.950 kb on - strand at 930.070 kb on + strand at 930.078 kb on - strand at 930.080 kb on + strand at 930.184 kb on + strand, within Shewana3_0806 at 930.444 kb on + strand, within Shewana3_0806 at 930.488 kb on + strand, within Shewana3_0806 at 931.217 kb on + strand at 931.217 kb on + strand at 931.340 kb on + strand, within Shewana3_0807 at 931.394 kb on - strand, within Shewana3_0807 at 931.427 kb on + strand, within Shewana3_0807 at 931.442 kb on + strand, within Shewana3_0807 at 931.458 kb on - strand, within Shewana3_0807 at 931.545 kb on - strand, within Shewana3_0807 at 931.788 kb on + strand at 931.796 kb on - strand at 931.796 kb on - strand at 931.796 kb on - strand at 931.891 kb on + strand at 931.899 kb on - strand at 931.899 kb on - strand at 931.899 kb on - strand at 931.910 kb on + strand at 931.996 kb on + strand, within Shewana3_0808 at 932.042 kb on - strand, within Shewana3_0808 at 932.071 kb on + strand, within Shewana3_0808
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 929,029 + Shewana3_0805 0.22 +0.8 929,066 + Shewana3_0805 0.25 +0.1 929,386 + Shewana3_0805 0.52 -0.5 929,386 + Shewana3_0805 0.52 -1.1 929,891 + -0.2 929,891 + -0.4 929,891 + +0.4 929,899 - -0.3 929,950 - +0.1 930,070 + -2.1 930,078 - +0.1 930,080 + -1.3 930,184 + Shewana3_0806 0.15 -0.8 930,444 + Shewana3_0806 0.38 -1.8 930,488 + Shewana3_0806 0.41 -0.6 931,217 + -1.1 931,217 + -0.0 931,340 + Shewana3_0807 0.14 -2.4 931,394 - Shewana3_0807 0.26 -1.4 931,427 + Shewana3_0807 0.33 -0.7 931,442 + Shewana3_0807 0.37 +0.1 931,458 - Shewana3_0807 0.40 +0.1 931,545 - Shewana3_0807 0.60 -1.3 931,788 + +0.5 931,796 - +1.1 931,796 - -1.1 931,796 - -2.4 931,891 + -2.3 931,899 - +0.4 931,899 - -2.6 931,899 - -0.7 931,910 + +1.0 931,996 + Shewana3_0808 0.17 -1.1 932,042 - Shewana3_0808 0.20 -0.3 932,071 + Shewana3_0808 0.23 +0.2
Or see this region's nucleotide sequence