Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0779

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0778 and Shewana3_0779 overlap by 4 nucleotidesShewana3_0779 and Shewana3_0780 are separated by 295 nucleotides Shewana3_0778: Shewana3_0778 - ammonium transporter (RefSeq), at 900,554 to 901,954 _0778 Shewana3_0779: Shewana3_0779 - nitrogen regulatory protein P-II (RefSeq), at 901,951 to 902,289 _0779 Shewana3_0780: Shewana3_0780 - 2-dehydropantoate 2-reductase (RefSeq), at 902,585 to 903,568 _0780 Position (kb) 901 902 903Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 900.954 kb on + strand, within Shewana3_0778at 900.986 kb on - strand, within Shewana3_0778at 900.993 kb on - strand, within Shewana3_0778at 901.228 kb on - strand, within Shewana3_0778at 901.291 kb on + strand, within Shewana3_0778at 901.294 kb on - strand, within Shewana3_0778at 901.495 kb on - strand, within Shewana3_0778at 901.613 kb on + strand, within Shewana3_0778at 901.613 kb on + strand, within Shewana3_0778at 901.618 kb on + strand, within Shewana3_0778at 901.618 kb on + strand, within Shewana3_0778at 901.700 kb on - strand, within Shewana3_0778at 901.715 kb on - strand, within Shewana3_0778at 901.798 kb on - strand, within Shewana3_0778at 902.155 kb on - strand, within Shewana3_0779at 902.186 kb on - strand, within Shewana3_0779at 902.712 kb on + strand, within Shewana3_0780at 902.730 kb on - strand, within Shewana3_0780at 902.788 kb on + strand, within Shewana3_0780at 902.912 kb on - strand, within Shewana3_0780at 902.970 kb on - strand, within Shewana3_0780at 902.991 kb on + strand, within Shewana3_0780at 902.993 kb on + strand, within Shewana3_0780at 903.003 kb on + strand, within Shewana3_0780at 903.003 kb on + strand, within Shewana3_0780at 903.011 kb on - strand, within Shewana3_0780at 903.011 kb on - strand, within Shewana3_0780at 903.011 kb on - strand, within Shewana3_0780at 903.079 kb on - strand, within Shewana3_0780at 903.144 kb on - strand, within Shewana3_0780at 903.184 kb on - strand, within Shewana3_0780

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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900,954 + Shewana3_0778 0.29 -0.9
900,986 - Shewana3_0778 0.31 -0.0
900,993 - Shewana3_0778 0.31 -0.2
901,228 - Shewana3_0778 0.48 -0.5
901,291 + Shewana3_0778 0.53 -1.3
901,294 - Shewana3_0778 0.53 -0.1
901,495 - Shewana3_0778 0.67 -1.5
901,613 + Shewana3_0778 0.76 -2.9
901,613 + Shewana3_0778 0.76 -1.0
901,618 + Shewana3_0778 0.76 -0.6
901,618 + Shewana3_0778 0.76 +0.2
901,700 - Shewana3_0778 0.82 +0.3
901,715 - Shewana3_0778 0.83 +0.1
901,798 - Shewana3_0778 0.89 +1.3
902,155 - Shewana3_0779 0.60 -1.8
902,186 - Shewana3_0779 0.69 -0.8
902,712 + Shewana3_0780 0.13 +1.5
902,730 - Shewana3_0780 0.15 +2.4
902,788 + Shewana3_0780 0.21 +4.6
902,912 - Shewana3_0780 0.33 +0.6
902,970 - Shewana3_0780 0.39 +0.4
902,991 + Shewana3_0780 0.41 +0.7
902,993 + Shewana3_0780 0.41 +1.2
903,003 + Shewana3_0780 0.42 +0.4
903,003 + Shewana3_0780 0.42 -0.5
903,011 - Shewana3_0780 0.43 +1.8
903,011 - Shewana3_0780 0.43 +1.0
903,011 - Shewana3_0780 0.43 +0.9
903,079 - Shewana3_0780 0.50 +1.2
903,144 - Shewana3_0780 0.57 +0.9
903,184 - Shewana3_0780 0.61 +0.6

Or see this region's nucleotide sequence