Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0746

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0745 and Shewana3_0746 are separated by 157 nucleotidesShewana3_0746 and Shewana3_0747 are separated by 3 nucleotides Shewana3_0745: Shewana3_0745 - putative iron-sulfur cluster binding protein (RefSeq), at 864,279 to 865,460 _0745 Shewana3_0746: Shewana3_0746 - extracellular solute-binding protein (RefSeq), at 865,618 to 866,445 _0746 Shewana3_0747: Shewana3_0747 - diguanylate cyclase (RefSeq), at 866,449 to 868,389 _0747 Position (kb) 865 866 867Strain fitness (log2 ratio) -2 -1 0 1 2at 864.786 kb on - strand, within Shewana3_0745at 864.820 kb on - strand, within Shewana3_0745at 864.951 kb on + strand, within Shewana3_0745at 865.149 kb on + strand, within Shewana3_0745at 865.157 kb on - strand, within Shewana3_0745at 865.157 kb on - strand, within Shewana3_0745at 865.392 kb on - strandat 865.510 kb on - strandat 865.530 kb on - strandat 865.629 kb on + strandat 865.655 kb on - strandat 865.672 kb on + strandat 865.672 kb on + strandat 865.672 kb on + strandat 865.763 kb on - strand, within Shewana3_0746at 865.780 kb on - strand, within Shewana3_0746at 865.785 kb on - strand, within Shewana3_0746at 865.813 kb on - strand, within Shewana3_0746at 865.878 kb on + strand, within Shewana3_0746at 865.886 kb on - strand, within Shewana3_0746at 865.919 kb on - strand, within Shewana3_0746at 866.325 kb on - strand, within Shewana3_0746at 866.690 kb on + strand, within Shewana3_0747at 866.767 kb on + strand, within Shewana3_0747at 866.767 kb on + strand, within Shewana3_0747at 866.775 kb on - strand, within Shewana3_0747at 866.779 kb on + strand, within Shewana3_0747at 866.966 kb on - strand, within Shewana3_0747at 867.015 kb on - strand, within Shewana3_0747at 867.196 kb on + strand, within Shewana3_0747at 867.429 kb on - strand, within Shewana3_0747

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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864,786 - Shewana3_0745 0.43 -1.2
864,820 - Shewana3_0745 0.46 -1.3
864,951 + Shewana3_0745 0.57 -0.7
865,149 + Shewana3_0745 0.74 -1.4
865,157 - Shewana3_0745 0.74 +0.1
865,157 - Shewana3_0745 0.74 +0.2
865,392 - -1.0
865,510 - -2.2
865,530 - -0.4
865,629 + -0.7
865,655 - +0.3
865,672 + -1.2
865,672 + -0.1
865,672 + -0.2
865,763 - Shewana3_0746 0.18 -2.3
865,780 - Shewana3_0746 0.20 -0.7
865,785 - Shewana3_0746 0.20 -1.5
865,813 - Shewana3_0746 0.24 -0.1
865,878 + Shewana3_0746 0.31 -1.2
865,886 - Shewana3_0746 0.32 -1.5
865,919 - Shewana3_0746 0.36 -0.4
866,325 - Shewana3_0746 0.85 -2.7
866,690 + Shewana3_0747 0.12 +1.5
866,767 + Shewana3_0747 0.16 -1.1
866,767 + Shewana3_0747 0.16 -1.3
866,775 - Shewana3_0747 0.17 +2.4
866,779 + Shewana3_0747 0.17 +0.4
866,966 - Shewana3_0747 0.27 +1.9
867,015 - Shewana3_0747 0.29 +0.3
867,196 + Shewana3_0747 0.38 +1.3
867,429 - Shewana3_0747 0.50 +0.2

Or see this region's nucleotide sequence