Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0715 and Shewana3_0716 are separated by 568 nucleotides Shewana3_0716 and Shewana3_0717 are separated by 75 nucleotides Shewana3_0717 and Shewana3_0718 are separated by 227 nucleotides
Shewana3_0715: Shewana3_0715 - putative chemotaxis protein CheX (RefSeq), at 832,282 to 832,746
_0715
Shewana3_0716: Shewana3_0716 - TonB-dependent siderophore receptor (RefSeq), at 833,315 to 835,510
_0716
Shewana3_0717: Shewana3_0717 - putative hydroxylase (RefSeq), at 835,586 to 836,260
_0717
Shewana3_0718: Shewana3_0718 - tRNA-dihydrouridine synthase A (RefSeq), at 836,488 to 837,492
_0718
Position (kb) 833
834
835
836 Strain fitness (log2 ratio) -2
-1
0
1
2 at 832.316 kb on - strand at 832.327 kb on + strand at 832.380 kb on - strand, within Shewana3_0715 at 832.403 kb on - strand, within Shewana3_0715 at 832.776 kb on - strand at 832.777 kb on - strand at 832.777 kb on - strand at 833.484 kb on - strand at 833.580 kb on - strand, within Shewana3_0716 at 833.586 kb on - strand, within Shewana3_0716 at 833.645 kb on - strand, within Shewana3_0716 at 833.645 kb on - strand, within Shewana3_0716 at 833.803 kb on - strand, within Shewana3_0716 at 834.174 kb on - strand, within Shewana3_0716 at 834.174 kb on - strand, within Shewana3_0716 at 834.221 kb on + strand, within Shewana3_0716 at 834.357 kb on + strand, within Shewana3_0716 at 834.365 kb on - strand, within Shewana3_0716 at 834.456 kb on + strand, within Shewana3_0716 at 834.456 kb on + strand, within Shewana3_0716 at 834.464 kb on - strand, within Shewana3_0716 at 834.464 kb on - strand, within Shewana3_0716 at 834.468 kb on + strand, within Shewana3_0716 at 834.509 kb on + strand, within Shewana3_0716 at 834.574 kb on - strand, within Shewana3_0716 at 834.599 kb on - strand, within Shewana3_0716 at 834.614 kb on - strand, within Shewana3_0716 at 834.735 kb on + strand, within Shewana3_0716 at 834.810 kb on - strand, within Shewana3_0716 at 834.864 kb on - strand, within Shewana3_0716 at 834.936 kb on + strand, within Shewana3_0716 at 835.261 kb on + strand, within Shewana3_0716 at 835.303 kb on - strand at 835.504 kb on + strand at 835.504 kb on + strand at 835.729 kb on + strand, within Shewana3_0717 at 835.827 kb on - strand, within Shewana3_0717 at 836.223 kb on - strand at 836.304 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 832,316 - +0.1 832,327 + +0.9 832,380 - Shewana3_0715 0.21 -0.4 832,403 - Shewana3_0715 0.26 -1.8 832,776 - -0.1 832,777 - -0.5 832,777 - -0.5 833,484 - -0.6 833,580 - Shewana3_0716 0.12 +1.4 833,586 - Shewana3_0716 0.12 -0.3 833,645 - Shewana3_0716 0.15 +0.3 833,645 - Shewana3_0716 0.15 +0.4 833,803 - Shewana3_0716 0.22 +2.2 834,174 - Shewana3_0716 0.39 +0.7 834,174 - Shewana3_0716 0.39 +1.3 834,221 + Shewana3_0716 0.41 +0.1 834,357 + Shewana3_0716 0.47 -0.5 834,365 - Shewana3_0716 0.48 +0.6 834,456 + Shewana3_0716 0.52 +1.0 834,456 + Shewana3_0716 0.52 +1.5 834,464 - Shewana3_0716 0.52 +1.3 834,464 - Shewana3_0716 0.52 +0.8 834,468 + Shewana3_0716 0.53 +1.2 834,509 + Shewana3_0716 0.54 +0.5 834,574 - Shewana3_0716 0.57 -0.0 834,599 - Shewana3_0716 0.58 +1.3 834,614 - Shewana3_0716 0.59 +1.2 834,735 + Shewana3_0716 0.65 +0.3 834,810 - Shewana3_0716 0.68 -0.6 834,864 - Shewana3_0716 0.71 +1.4 834,936 + Shewana3_0716 0.74 +1.5 835,261 + Shewana3_0716 0.89 +0.3 835,303 - -0.4 835,504 + +1.1 835,504 + +0.0 835,729 + Shewana3_0717 0.21 +0.4 835,827 - Shewana3_0717 0.36 +1.4 836,223 - +1.2 836,304 - -0.5
Or see this region's nucleotide sequence