Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0706 and Shewana3_0707 overlap by 1 nucleotides Shewana3_0707 and thiH are separated by 0 nucleotides
Shewana3_0706: Shewana3_0706 - biotin synthase (RefSeq), at 821,103 to 822,182
_0706
Shewana3_0707: Shewana3_0707 - hypothetical protein (RefSeq), at 822,182 to 822,820
_0707
Shewana3_0708: thiH - thiamine biosynthesis protein ThiH (RefSeq), at 822,821 to 824,260
thiH
Position (kb) 822
823 Strain fitness (log2 ratio) -2
-1
0
1 at 821.402 kb on + strand, within Shewana3_0706 at 821.402 kb on + strand, within Shewana3_0706 at 821.584 kb on - strand, within Shewana3_0706 at 821.841 kb on + strand, within Shewana3_0706 at 821.854 kb on - strand, within Shewana3_0706 at 821.877 kb on - strand, within Shewana3_0706 at 822.083 kb on + strand at 822.102 kb on + strand at 822.268 kb on + strand, within Shewana3_0707 at 822.268 kb on + strand, within Shewana3_0707 at 822.352 kb on - strand, within Shewana3_0707 at 822.352 kb on - strand, within Shewana3_0707 at 822.365 kb on - strand, within Shewana3_0707 at 822.572 kb on - strand, within Shewana3_0707 at 822.618 kb on + strand, within Shewana3_0707 at 822.630 kb on - strand, within Shewana3_0707 at 822.874 kb on + strand at 822.882 kb on - strand at 822.926 kb on - strand at 822.981 kb on - strand, within thiH at 822.981 kb on - strand, within thiH at 823.154 kb on + strand, within thiH at 823.202 kb on + strand, within thiH at 823.227 kb on - strand, within thiH at 823.295 kb on - strand, within thiH at 823.302 kb on + strand, within thiH at 823.448 kb on - strand, within thiH at 823.499 kb on - strand, within thiH at 823.562 kb on - strand, within thiH at 823.566 kb on + strand, within thiH at 823.574 kb on - strand, within thiH at 823.574 kb on - strand, within thiH at 823.645 kb on - strand, within thiH at 823.692 kb on - strand, within thiH at 823.692 kb on - strand, within thiH at 823.748 kb on + strand, within thiH at 823.753 kb on + strand, within thiH at 823.761 kb on - strand, within thiH
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 821,402 + Shewana3_0706 0.28 -0.8 821,402 + Shewana3_0706 0.28 -2.5 821,584 - Shewana3_0706 0.45 -0.3 821,841 + Shewana3_0706 0.68 -1.2 821,854 - Shewana3_0706 0.70 -0.2 821,877 - Shewana3_0706 0.72 +0.4 822,083 + -0.5 822,102 + -1.0 822,268 + Shewana3_0707 0.13 -1.0 822,268 + Shewana3_0707 0.13 -1.8 822,352 - Shewana3_0707 0.27 -0.4 822,352 - Shewana3_0707 0.27 +0.9 822,365 - Shewana3_0707 0.29 +0.2 822,572 - Shewana3_0707 0.61 -0.3 822,618 + Shewana3_0707 0.68 -1.3 822,630 - Shewana3_0707 0.70 +0.3 822,874 + -0.0 822,882 - -0.8 822,926 - -0.8 822,981 - thiH Shewana3_0708 0.11 -1.2 822,981 - thiH Shewana3_0708 0.11 -2.2 823,154 + thiH Shewana3_0708 0.23 -0.9 823,202 + thiH Shewana3_0708 0.26 +0.1 823,227 - thiH Shewana3_0708 0.28 -1.0 823,295 - thiH Shewana3_0708 0.33 -0.2 823,302 + thiH Shewana3_0708 0.33 -1.6 823,448 - thiH Shewana3_0708 0.44 -0.5 823,499 - thiH Shewana3_0708 0.47 -0.5 823,562 - thiH Shewana3_0708 0.51 -0.2 823,566 + thiH Shewana3_0708 0.52 -0.5 823,574 - thiH Shewana3_0708 0.52 -1.2 823,574 - thiH Shewana3_0708 0.52 -0.1 823,645 - thiH Shewana3_0708 0.57 -0.4 823,692 - thiH Shewana3_0708 0.60 -1.3 823,692 - thiH Shewana3_0708 0.60 +0.0 823,748 + thiH Shewana3_0708 0.64 -1.1 823,753 + thiH Shewana3_0708 0.65 -0.8 823,761 - thiH Shewana3_0708 0.65 +0.6
Or see this region's nucleotide sequence