Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0654 and Shewana3_0655 are separated by 168 nucleotides Shewana3_0655 and Shewana3_0656 are separated by 88 nucleotides Shewana3_0656 and Shewana3_0657 overlap by 8 nucleotides
Shewana3_0654: Shewana3_0654 - Mg2 transporter protein, CorA family protein (RefSeq), at 774,044 to 775,021
_0654
Shewana3_0655: Shewana3_0655 - hypothetical protein (RefSeq), at 775,190 to 775,564
_0655
Shewana3_0656: Shewana3_0656 - two component LuxR family transcriptional regulator (RefSeq), at 775,653 to 776,282
_0656
Shewana3_0657: Shewana3_0657 - nitrate/nitrite sensor protein NarQ (RefSeq), at 776,275 to 778,071
_0657
Position (kb) 775
776 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 774.743 kb on - strand, within Shewana3_0654 at 774.758 kb on + strand, within Shewana3_0654 at 774.854 kb on + strand, within Shewana3_0654 at 774.948 kb on - strand at 774.948 kb on - strand at 774.955 kb on - strand at 774.979 kb on + strand at 774.982 kb on - strand at 774.987 kb on - strand at 775.102 kb on + strand at 775.207 kb on + strand at 775.237 kb on - strand, within Shewana3_0655 at 775.239 kb on + strand, within Shewana3_0655 at 775.262 kb on - strand, within Shewana3_0655 at 775.273 kb on - strand, within Shewana3_0655 at 775.386 kb on + strand, within Shewana3_0655 at 775.537 kb on + strand at 775.537 kb on + strand at 775.758 kb on - strand, within Shewana3_0656 at 776.031 kb on + strand, within Shewana3_0656 at 776.079 kb on - strand, within Shewana3_0656 at 776.079 kb on - strand, within Shewana3_0656 at 776.120 kb on + strand, within Shewana3_0656 at 776.168 kb on - strand, within Shewana3_0656 at 776.224 kb on - strand at 776.266 kb on + strand at 776.274 kb on - strand at 776.383 kb on + strand at 776.390 kb on - strand at 776.499 kb on - strand, within Shewana3_0657 at 776.553 kb on - strand, within Shewana3_0657
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 774,743 - Shewana3_0654 0.71 -0.1 774,758 + Shewana3_0654 0.73 -0.0 774,854 + Shewana3_0654 0.83 -0.2 774,948 - +0.4 774,948 - -1.1 774,955 - -1.0 774,979 + -2.2 774,982 - +0.9 774,987 - -0.5 775,102 + -0.0 775,207 + +0.3 775,237 - Shewana3_0655 0.13 -0.4 775,239 + Shewana3_0655 0.13 +0.2 775,262 - Shewana3_0655 0.19 -1.4 775,273 - Shewana3_0655 0.22 -0.3 775,386 + Shewana3_0655 0.52 +0.3 775,537 + -1.5 775,537 + -0.6 775,758 - Shewana3_0656 0.17 -0.4 776,031 + Shewana3_0656 0.60 -0.6 776,079 - Shewana3_0656 0.68 -0.4 776,079 - Shewana3_0656 0.68 +5.6 776,120 + Shewana3_0656 0.74 +0.8 776,168 - Shewana3_0656 0.82 -0.2 776,224 - -1.1 776,266 + +0.0 776,274 - +0.4 776,383 + -1.2 776,390 - -0.2 776,499 - Shewana3_0657 0.12 +0.2 776,553 - Shewana3_0657 0.15 -0.3
Or see this region's nucleotide sequence