Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0633

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0632 and Shewana3_0633 are separated by 291 nucleotidesShewana3_0633 and Shewana3_0634 are separated by 62 nucleotides Shewana3_0632: Shewana3_0632 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 742,284 to 743,582 _0632 Shewana3_0633: Shewana3_0633 - molydopterin dinucleotide-binding region (RefSeq), at 743,874 to 746,981 _0633 Shewana3_0634: Shewana3_0634 - polysulphide reductase, NrfD (RefSeq), at 747,044 to 748,138 _0634 Position (kb) 743 744 745 746 747Strain fitness (log2 ratio) -2 -1 0 1at 742.893 kb on - strand, within Shewana3_0632at 743.143 kb on + strand, within Shewana3_0632at 743.151 kb on - strand, within Shewana3_0632at 743.255 kb on + strand, within Shewana3_0632at 743.257 kb on - strand, within Shewana3_0632at 743.430 kb on - strand, within Shewana3_0632at 743.484 kb on - strandat 743.636 kb on + strandat 743.678 kb on + strandat 743.678 kb on + strandat 743.678 kb on + strandat 743.678 kb on + strandat 743.984 kb on + strandat 744.071 kb on + strandat 744.071 kb on + strandat 744.219 kb on + strand, within Shewana3_0633at 744.260 kb on - strand, within Shewana3_0633at 744.267 kb on + strand, within Shewana3_0633at 744.336 kb on + strand, within Shewana3_0633at 744.344 kb on - strand, within Shewana3_0633at 744.344 kb on - strand, within Shewana3_0633at 744.344 kb on - strand, within Shewana3_0633at 744.567 kb on - strand, within Shewana3_0633at 744.758 kb on - strand, within Shewana3_0633at 745.093 kb on + strand, within Shewana3_0633at 745.101 kb on - strand, within Shewana3_0633at 745.101 kb on - strand, within Shewana3_0633at 745.114 kb on + strand, within Shewana3_0633at 745.213 kb on - strand, within Shewana3_0633at 745.327 kb on + strand, within Shewana3_0633at 745.514 kb on + strand, within Shewana3_0633at 745.514 kb on + strand, within Shewana3_0633at 745.522 kb on - strand, within Shewana3_0633at 745.522 kb on - strand, within Shewana3_0633at 745.664 kb on - strand, within Shewana3_0633at 745.715 kb on - strand, within Shewana3_0633at 745.759 kb on + strand, within Shewana3_0633at 745.965 kb on + strand, within Shewana3_0633at 745.965 kb on + strand, within Shewana3_0633at 745.973 kb on - strand, within Shewana3_0633at 746.131 kb on + strand, within Shewana3_0633at 746.139 kb on - strand, within Shewana3_0633at 746.139 kb on - strand, within Shewana3_0633at 746.139 kb on - strand, within Shewana3_0633at 746.139 kb on - strand, within Shewana3_0633at 746.197 kb on - strand, within Shewana3_0633at 746.197 kb on - strand, within Shewana3_0633at 746.282 kb on - strand, within Shewana3_0633at 746.332 kb on - strand, within Shewana3_0633at 746.491 kb on - strand, within Shewana3_0633at 746.717 kb on + strandat 746.801 kb on - strandat 746.898 kb on + strandat 746.904 kb on + strandat 746.945 kb on - strandat 746.998 kb on - strandat 747.125 kb on + strandat 747.330 kb on - strand, within Shewana3_0634at 747.428 kb on + strand, within Shewana3_0634at 747.448 kb on + strand, within Shewana3_0634at 747.456 kb on - strand, within Shewana3_0634at 747.456 kb on - strand, within Shewana3_0634at 747.494 kb on + strand, within Shewana3_0634at 747.815 kb on + strand, within Shewana3_0634at 747.922 kb on + strand, within Shewana3_0634

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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742,893 - Shewana3_0632 0.47 -1.6
743,143 + Shewana3_0632 0.66 -1.1
743,151 - Shewana3_0632 0.67 -0.9
743,255 + Shewana3_0632 0.75 +0.2
743,257 - Shewana3_0632 0.75 -0.9
743,430 - Shewana3_0632 0.88 +0.1
743,484 - -0.3
743,636 + -0.1
743,678 + -0.4
743,678 + -0.3
743,678 + -0.6
743,678 + +0.9
743,984 + -0.4
744,071 + -2.6
744,071 + -1.0
744,219 + Shewana3_0633 0.11 -1.3
744,260 - Shewana3_0633 0.12 -1.6
744,267 + Shewana3_0633 0.13 -1.1
744,336 + Shewana3_0633 0.15 +1.2
744,344 - Shewana3_0633 0.15 +0.3
744,344 - Shewana3_0633 0.15 -0.8
744,344 - Shewana3_0633 0.15 +0.1
744,567 - Shewana3_0633 0.22 -0.2
744,758 - Shewana3_0633 0.28 +0.5
745,093 + Shewana3_0633 0.39 -1.7
745,101 - Shewana3_0633 0.39 -0.0
745,101 - Shewana3_0633 0.39 +0.3
745,114 + Shewana3_0633 0.40 +0.3
745,213 - Shewana3_0633 0.43 -0.0
745,327 + Shewana3_0633 0.47 +0.5
745,514 + Shewana3_0633 0.53 -0.7
745,514 + Shewana3_0633 0.53 -0.5
745,522 - Shewana3_0633 0.53 -2.3
745,522 - Shewana3_0633 0.53 +0.1
745,664 - Shewana3_0633 0.58 -0.4
745,715 - Shewana3_0633 0.59 -1.0
745,759 + Shewana3_0633 0.61 -0.7
745,965 + Shewana3_0633 0.67 -0.2
745,965 + Shewana3_0633 0.67 -1.8
745,973 - Shewana3_0633 0.68 -0.3
746,131 + Shewana3_0633 0.73 +1.1
746,139 - Shewana3_0633 0.73 -0.8
746,139 - Shewana3_0633 0.73 -0.2
746,139 - Shewana3_0633 0.73 -0.8
746,139 - Shewana3_0633 0.73 -1.1
746,197 - Shewana3_0633 0.75 -0.3
746,197 - Shewana3_0633 0.75 -0.4
746,282 - Shewana3_0633 0.77 -0.4
746,332 - Shewana3_0633 0.79 +1.4
746,491 - Shewana3_0633 0.84 -1.5
746,717 + +0.8
746,801 - +0.9
746,898 + -0.4
746,904 + -0.4
746,945 - -0.1
746,998 - +1.7
747,125 + -0.9
747,330 - Shewana3_0634 0.26 +0.1
747,428 + Shewana3_0634 0.35 -0.7
747,448 + Shewana3_0634 0.37 -0.5
747,456 - Shewana3_0634 0.38 -0.2
747,456 - Shewana3_0634 0.38 +0.6
747,494 + Shewana3_0634 0.41 -1.1
747,815 + Shewana3_0634 0.70 -0.8
747,922 + Shewana3_0634 0.80 +0.2

Or see this region's nucleotide sequence