Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0570 and Shewana3_0571 are separated by 18 nucleotides Shewana3_0571 and Shewana3_0572 are separated by 558 nucleotides
Shewana3_0570: Shewana3_0570 - diguanylate cyclase (RefSeq), at 662,313 to 663,287
_0570
Shewana3_0571: Shewana3_0571 - response regulator receiver protein (RefSeq), at 663,306 to 664,301
_0571
Shewana3_0572: Shewana3_0572 - enoyl-CoA hydratase (RefSeq), at 664,860 to 665,666
_0572
Position (kb) 663
664
665 Strain fitness (log2 ratio) -2
-1
0
1 at 662.345 kb on - strand at 662.390 kb on - strand at 662.444 kb on + strand, within Shewana3_0570 at 662.444 kb on + strand, within Shewana3_0570 at 662.444 kb on + strand, within Shewana3_0570 at 662.444 kb on + strand, within Shewana3_0570 at 662.444 kb on + strand, within Shewana3_0570 at 662.444 kb on + strand, within Shewana3_0570 at 662.452 kb on - strand, within Shewana3_0570 at 662.452 kb on - strand, within Shewana3_0570 at 662.452 kb on - strand, within Shewana3_0570 at 662.452 kb on - strand, within Shewana3_0570 at 662.529 kb on + strand, within Shewana3_0570 at 662.582 kb on - strand, within Shewana3_0570 at 662.627 kb on + strand, within Shewana3_0570 at 662.707 kb on - strand, within Shewana3_0570 at 662.707 kb on - strand, within Shewana3_0570 at 662.801 kb on + strand, within Shewana3_0570 at 662.848 kb on + strand, within Shewana3_0570 at 663.180 kb on + strand, within Shewana3_0570 at 663.326 kb on + strand at 663.480 kb on - strand, within Shewana3_0571 at 663.483 kb on + strand, within Shewana3_0571 at 663.527 kb on + strand, within Shewana3_0571 at 663.722 kb on + strand, within Shewana3_0571 at 663.724 kb on + strand, within Shewana3_0571 at 663.887 kb on + strand, within Shewana3_0571 at 664.109 kb on + strand, within Shewana3_0571 at 664.109 kb on - strand, within Shewana3_0571 at 664.166 kb on - strand, within Shewana3_0571 at 664.166 kb on - strand, within Shewana3_0571 at 664.166 kb on - strand, within Shewana3_0571 at 664.246 kb on - strand at 664.248 kb on - strand at 664.281 kb on + strand at 664.281 kb on + strand at 664.281 kb on + strand at 664.294 kb on - strand at 664.336 kb on + strand at 664.394 kb on - strand at 664.646 kb on - strand at 664.903 kb on + strand at 664.911 kb on - strand at 665.159 kb on + strand, within Shewana3_0572 at 665.159 kb on + strand, within Shewana3_0572 at 665.186 kb on + strand, within Shewana3_0572 at 665.192 kb on - strand, within Shewana3_0572 at 665.295 kb on + strand, within Shewana3_0572
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 662,345 - +0.5 662,390 - -1.4 662,444 + Shewana3_0570 0.13 +0.9 662,444 + Shewana3_0570 0.13 +1.0 662,444 + Shewana3_0570 0.13 -1.1 662,444 + Shewana3_0570 0.13 -0.9 662,444 + Shewana3_0570 0.13 -2.2 662,444 + Shewana3_0570 0.13 +0.9 662,452 - Shewana3_0570 0.14 -0.3 662,452 - Shewana3_0570 0.14 -0.6 662,452 - Shewana3_0570 0.14 -0.2 662,452 - Shewana3_0570 0.14 -0.5 662,529 + Shewana3_0570 0.22 +0.2 662,582 - Shewana3_0570 0.28 +0.0 662,627 + Shewana3_0570 0.32 -1.1 662,707 - Shewana3_0570 0.40 -0.0 662,707 - Shewana3_0570 0.40 -0.4 662,801 + Shewana3_0570 0.50 +0.8 662,848 + Shewana3_0570 0.55 -1.0 663,180 + Shewana3_0570 0.89 -1.1 663,326 + +0.7 663,480 - Shewana3_0571 0.17 -2.1 663,483 + Shewana3_0571 0.18 -0.8 663,527 + Shewana3_0571 0.22 -0.7 663,722 + Shewana3_0571 0.42 -2.6 663,724 + Shewana3_0571 0.42 -0.1 663,887 + Shewana3_0571 0.58 -0.8 664,109 + Shewana3_0571 0.81 -0.9 664,109 - Shewana3_0571 0.81 -1.8 664,166 - Shewana3_0571 0.86 +0.6 664,166 - Shewana3_0571 0.86 -0.2 664,166 - Shewana3_0571 0.86 -0.5 664,246 - -0.6 664,248 - -0.1 664,281 + +0.9 664,281 + -0.5 664,281 + -1.2 664,294 - -1.1 664,336 + -2.0 664,394 - -0.8 664,646 - -0.5 664,903 + -1.3 664,911 - +0.1 665,159 + Shewana3_0572 0.37 +0.8 665,159 + Shewana3_0572 0.37 -1.0 665,186 + Shewana3_0572 0.40 -1.6 665,192 - Shewana3_0572 0.41 +0.4 665,295 + Shewana3_0572 0.54 -0.6
Or see this region's nucleotide sequence