Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0542 and Shewana3_0543 overlap by 4 nucleotides Shewana3_0543 and Shewana3_0544 are separated by 9 nucleotides Shewana3_0544 and Shewana3_0545 are separated by 166 nucleotides
Shewana3_0542: Shewana3_0542 - multi-sensor signal transduction histidine kinase (RefSeq), at 636,365 to 638,524
_0542
Shewana3_0543: Shewana3_0543 - response regulator receiver protein (RefSeq), at 638,521 to 638,955
_0543
Shewana3_0544: Shewana3_0544 - response regulator receiver modulated diguanylate cyclase/phosphodiesterase (RefSeq), at 638,965 to 640,683
_0544
Shewana3_0545: Shewana3_0545 - alpha-L-glutamate ligase (RefSeq), at 640,850 to 641,755
_0545
Position (kb) 638
639
640
641 Strain fitness (log2 ratio) -2
-1
0
1
2 at 638.001 kb on + strand, within Shewana3_0542 at 638.185 kb on + strand, within Shewana3_0542 at 638.269 kb on - strand, within Shewana3_0542 at 638.350 kb on - strand at 638.361 kb on + strand at 638.454 kb on + strand at 638.462 kb on - strand at 638.518 kb on + strand at 638.518 kb on + strand at 638.629 kb on + strand, within Shewana3_0543 at 638.862 kb on - strand, within Shewana3_0543 at 639.146 kb on + strand, within Shewana3_0544 at 639.154 kb on - strand, within Shewana3_0544 at 639.154 kb on - strand, within Shewana3_0544 at 639.179 kb on + strand, within Shewana3_0544 at 639.183 kb on + strand, within Shewana3_0544 at 639.242 kb on + strand, within Shewana3_0544 at 639.242 kb on + strand, within Shewana3_0544 at 639.693 kb on + strand, within Shewana3_0544 at 639.724 kb on + strand, within Shewana3_0544 at 639.732 kb on - strand, within Shewana3_0544 at 639.775 kb on - strand, within Shewana3_0544 at 639.828 kb on - strand, within Shewana3_0544 at 640.114 kb on + strand, within Shewana3_0544 at 640.158 kb on - strand, within Shewana3_0544 at 640.160 kb on + strand, within Shewana3_0544 at 640.583 kb on - strand at 640.603 kb on + strand at 640.628 kb on + strand at 640.636 kb on - strand at 640.636 kb on - strand at 640.656 kb on + strand at 640.688 kb on + strand at 640.721 kb on + strand at 640.890 kb on - strand at 641.188 kb on - strand, within Shewana3_0545 at 641.188 kb on - strand, within Shewana3_0545 at 641.236 kb on + strand, within Shewana3_0545 at 641.486 kb on + strand, within Shewana3_0545 at 641.526 kb on + strand, within Shewana3_0545 at 641.571 kb on + strand, within Shewana3_0545 at 641.579 kb on - strand, within Shewana3_0545 at 641.655 kb on + strand, within Shewana3_0545
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 638,001 + Shewana3_0542 0.76 -0.8 638,185 + Shewana3_0542 0.84 -0.2 638,269 - Shewana3_0542 0.88 +1.3 638,350 - +1.1 638,361 + -0.6 638,454 + -0.7 638,462 - +2.7 638,518 + +0.3 638,518 + +0.4 638,629 + Shewana3_0543 0.25 -0.3 638,862 - Shewana3_0543 0.78 -2.0 639,146 + Shewana3_0544 0.11 -1.8 639,154 - Shewana3_0544 0.11 -0.1 639,154 - Shewana3_0544 0.11 -2.0 639,179 + Shewana3_0544 0.12 +0.0 639,183 + Shewana3_0544 0.13 -0.3 639,242 + Shewana3_0544 0.16 -0.2 639,242 + Shewana3_0544 0.16 -1.4 639,693 + Shewana3_0544 0.42 +0.2 639,724 + Shewana3_0544 0.44 -0.4 639,732 - Shewana3_0544 0.45 -2.2 639,775 - Shewana3_0544 0.47 +1.0 639,828 - Shewana3_0544 0.50 -0.6 640,114 + Shewana3_0544 0.67 +0.3 640,158 - Shewana3_0544 0.69 -2.5 640,160 + Shewana3_0544 0.70 +0.0 640,583 - -0.4 640,603 + +0.1 640,628 + -2.3 640,636 - -1.4 640,636 - -1.0 640,656 + -1.5 640,688 + +0.7 640,721 + -0.3 640,890 - -1.9 641,188 - Shewana3_0545 0.37 -0.9 641,188 - Shewana3_0545 0.37 -2.0 641,236 + Shewana3_0545 0.43 +0.2 641,486 + Shewana3_0545 0.70 -0.6 641,526 + Shewana3_0545 0.75 +0.2 641,571 + Shewana3_0545 0.80 +0.2 641,579 - Shewana3_0545 0.80 +1.0 641,655 + Shewana3_0545 0.89 -0.3
Or see this region's nucleotide sequence