Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0519

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0518 and Shewana3_0519 are separated by 129 nucleotidesShewana3_0519 and mscL are separated by 82 nucleotidesmscL and Shewana3_0521 are separated by 184 nucleotides Shewana3_0518: Shewana3_0518 - CzcA family heavy metal efflux protein (RefSeq), at 607,495 to 610,707 _0518 Shewana3_0519: Shewana3_0519 - antibiotic biosynthesis monooxygenase (RefSeq), at 610,837 to 611,160 _0519 Shewana3_0520: mscL - large-conductance mechanosensitive channel (RefSeq), at 611,243 to 611,653 mscL Shewana3_0521: Shewana3_0521 - LysR family transcriptional regulator (RefSeq), at 611,838 to 612,791 _0521 Position (kb) 610 611 612Strain fitness (log2 ratio) -2 -1 0 1at 609.928 kb on + strand, within Shewana3_0518at 609.938 kb on + strand, within Shewana3_0518at 610.010 kb on + strand, within Shewana3_0518at 610.054 kb on + strand, within Shewana3_0518at 610.062 kb on - strand, within Shewana3_0518at 610.085 kb on - strand, within Shewana3_0518at 610.163 kb on + strand, within Shewana3_0518at 610.233 kb on - strand, within Shewana3_0518at 610.268 kb on + strand, within Shewana3_0518at 610.439 kb on + strandat 610.528 kb on + strandat 610.528 kb on + strandat 610.528 kb on + strandat 610.560 kb on - strandat 610.568 kb on + strandat 610.574 kb on - strandat 610.632 kb on - strandat 610.639 kb on + strandat 610.647 kb on - strandat 610.710 kb on - strandat 610.710 kb on - strandat 610.710 kb on - strandat 610.743 kb on + strandat 610.930 kb on + strand, within Shewana3_0519at 610.984 kb on + strand, within Shewana3_0519at 611.031 kb on - strand, within Shewana3_0519at 611.119 kb on + strand, within Shewana3_0519at 611.127 kb on - strand, within Shewana3_0519at 611.140 kb on + strandat 611.267 kb on - strandat 611.267 kb on - strandat 611.267 kb on - strandat 611.464 kb on - strand, within mscLat 611.512 kb on - strand, within mscLat 611.557 kb on - strand, within mscLat 611.557 kb on - strand, within mscLat 611.636 kb on - strandat 611.911 kb on + strandat 611.911 kb on + strandat 611.911 kb on + strandat 611.929 kb on - strandat 611.961 kb on + strand, within Shewana3_0521at 612.003 kb on - strand, within Shewana3_0521at 612.143 kb on + strand, within Shewana3_0521

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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609,928 + Shewana3_0518 0.76 +1.1
609,938 + Shewana3_0518 0.76 -0.4
610,010 + Shewana3_0518 0.78 +0.1
610,054 + Shewana3_0518 0.80 -0.8
610,062 - Shewana3_0518 0.80 -1.2
610,085 - Shewana3_0518 0.81 +0.0
610,163 + Shewana3_0518 0.83 -0.1
610,233 - Shewana3_0518 0.85 +1.7
610,268 + Shewana3_0518 0.86 -0.1
610,439 + -0.8
610,528 + +0.1
610,528 + +0.0
610,528 + +0.4
610,560 - -1.8
610,568 + -2.0
610,574 - -0.7
610,632 - -0.7
610,639 + +0.6
610,647 - -0.5
610,710 - -1.3
610,710 - -1.3
610,710 - -1.0
610,743 + +1.2
610,930 + Shewana3_0519 0.29 +0.6
610,984 + Shewana3_0519 0.45 -0.2
611,031 - Shewana3_0519 0.60 -0.3
611,119 + Shewana3_0519 0.87 -0.2
611,127 - Shewana3_0519 0.90 +0.8
611,140 + -0.2
611,267 - +0.5
611,267 - +0.5
611,267 - +0.6
611,464 - mscL Shewana3_0520 0.54 -1.3
611,512 - mscL Shewana3_0520 0.65 -0.3
611,557 - mscL Shewana3_0520 0.76 -0.2
611,557 - mscL Shewana3_0520 0.76 -0.8
611,636 - -0.2
611,911 + -0.0
611,911 + +1.1
611,911 + -0.6
611,929 - +1.2
611,961 + Shewana3_0521 0.13 -0.1
612,003 - Shewana3_0521 0.17 -1.5
612,143 + Shewana3_0521 0.32 -1.7

Or see this region's nucleotide sequence