Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0481 and Shewana3_0482 are separated by 45 nucleotides Shewana3_0482 and Shewana3_0483 are separated by 157 nucleotides Shewana3_0483 and Shewana3_0484 overlap by 4 nucleotides Shewana3_0484 and Shewana3_0485 are separated by 44 nucleotides
Shewana3_0481: Shewana3_0481 - response regulator receiver protein (RefSeq), at 562,825 to 564,396
_0481
Shewana3_0482: Shewana3_0482 - peptidase S9 prolyl oligopeptidase (RefSeq), at 564,442 to 566,502
_0482
Shewana3_0483: Shewana3_0483 - hypothetical protein (RefSeq), at 566,660 to 567,178
_0483
Shewana3_0484: Shewana3_0484 - XRE family transcriptional regulator (RefSeq), at 567,175 to 567,408
_0484
Shewana3_0485: Shewana3_0485 - hypothetical protein (RefSeq), at 567,453 to 568,031
_0485
Position (kb) 564
565
566
567 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 563.445 kb on + strand, within Shewana3_0481 at 563.649 kb on + strand, within Shewana3_0481 at 563.793 kb on + strand, within Shewana3_0481 at 563.851 kb on - strand, within Shewana3_0481 at 563.984 kb on - strand, within Shewana3_0481 at 563.984 kb on - strand, within Shewana3_0481 at 563.995 kb on + strand, within Shewana3_0481 at 564.166 kb on - strand, within Shewana3_0481 at 564.240 kb on + strand at 564.240 kb on + strand at 564.395 kb on + strand at 564.408 kb on - strand at 564.420 kb on + strand at 564.611 kb on + strand at 564.952 kb on - strand, within Shewana3_0482 at 565.043 kb on + strand, within Shewana3_0482 at 565.144 kb on - strand, within Shewana3_0482 at 565.144 kb on - strand, within Shewana3_0482 at 565.144 kb on - strand, within Shewana3_0482 at 565.144 kb on - strand, within Shewana3_0482 at 565.167 kb on - strand, within Shewana3_0482 at 565.589 kb on + strand, within Shewana3_0482 at 565.616 kb on + strand, within Shewana3_0482 at 565.632 kb on - strand, within Shewana3_0482 at 565.721 kb on - strand, within Shewana3_0482 at 565.877 kb on + strand, within Shewana3_0482 at 565.887 kb on + strand, within Shewana3_0482 at 566.017 kb on - strand, within Shewana3_0482 at 566.032 kb on + strand, within Shewana3_0482 at 566.040 kb on - strand, within Shewana3_0482 at 566.062 kb on - strand, within Shewana3_0482 at 566.077 kb on + strand, within Shewana3_0482 at 566.094 kb on + strand, within Shewana3_0482 at 566.160 kb on - strand, within Shewana3_0482 at 566.164 kb on + strand, within Shewana3_0482 at 566.470 kb on + strand at 566.632 kb on - strand at 566.642 kb on - strand at 567.130 kb on + strand at 567.243 kb on + strand, within Shewana3_0484 at 567.251 kb on - strand, within Shewana3_0484 at 567.251 kb on - strand, within Shewana3_0484 at 567.251 kb on - strand, within Shewana3_0484 at 567.297 kb on + strand, within Shewana3_0484 at 567.415 kb on + strand at 567.415 kb on + strand at 567.415 kb on + strand at 567.422 kb on + strand at 567.484 kb on + strand at 567.497 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 563,445 + Shewana3_0481 0.39 -0.3 563,649 + Shewana3_0481 0.52 -1.7 563,793 + Shewana3_0481 0.62 -0.1 563,851 - Shewana3_0481 0.65 +0.3 563,984 - Shewana3_0481 0.74 +0.5 563,984 - Shewana3_0481 0.74 -0.8 563,995 + Shewana3_0481 0.74 -0.7 564,166 - Shewana3_0481 0.85 -1.8 564,240 + +0.2 564,240 + +0.1 564,395 + -0.2 564,408 - -0.7 564,420 + -1.2 564,611 + -1.3 564,952 - Shewana3_0482 0.25 -0.6 565,043 + Shewana3_0482 0.29 -1.9 565,144 - Shewana3_0482 0.34 -0.7 565,144 - Shewana3_0482 0.34 +0.1 565,144 - Shewana3_0482 0.34 -0.1 565,144 - Shewana3_0482 0.34 -0.8 565,167 - Shewana3_0482 0.35 -0.5 565,589 + Shewana3_0482 0.56 -0.4 565,616 + Shewana3_0482 0.57 +0.2 565,632 - Shewana3_0482 0.58 -0.1 565,721 - Shewana3_0482 0.62 -0.8 565,877 + Shewana3_0482 0.70 -0.5 565,887 + Shewana3_0482 0.70 +7.4 566,017 - Shewana3_0482 0.76 -0.6 566,032 + Shewana3_0482 0.77 -0.1 566,040 - Shewana3_0482 0.78 -1.4 566,062 - Shewana3_0482 0.79 -0.7 566,077 + Shewana3_0482 0.79 +0.8 566,094 + Shewana3_0482 0.80 -0.8 566,160 - Shewana3_0482 0.83 +1.2 566,164 + Shewana3_0482 0.84 -1.0 566,470 + -0.3 566,632 - +0.1 566,642 - +0.4 567,130 + -1.0 567,243 + Shewana3_0484 0.29 -0.2 567,251 - Shewana3_0484 0.32 +0.7 567,251 - Shewana3_0484 0.32 -2.3 567,251 - Shewana3_0484 0.32 -0.1 567,297 + Shewana3_0484 0.52 -0.3 567,415 + -0.3 567,415 + -0.4 567,415 + -1.2 567,422 + +0.7 567,484 + -2.1 567,497 - -0.5
Or see this region's nucleotide sequence