Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0444 and Shewana3_0445 are separated by 346 nucleotides Shewana3_0445 and Shewana3_0446 are separated by 3 nucleotides Shewana3_0446 and Shewana3_0447 are separated by 6 nucleotides Shewana3_0447 and Shewana3_0448 are separated by 52 nucleotides
Shewana3_0444: Shewana3_0444 - band 7 protein (RefSeq), at 519,799 to 520,686
_0444
Shewana3_0445: Shewana3_0445 - hypothetical protein (RefSeq), at 521,033 to 521,287
_0445
Shewana3_0446: Shewana3_0446 - hypothetical protein (RefSeq), at 521,291 to 521,581
_0446
Shewana3_0447: Shewana3_0447 - response regulator receiver protein (RefSeq), at 521,588 to 523,207
_0447
Shewana3_0448: Shewana3_0448 - major facilitator transporter (RefSeq), at 523,260 to 524,432
_0448
Position (kb) 521
522
523
524 Strain fitness (log2 ratio) -1
0
1
2
3 at 521.000 kb on + strand at 521.159 kb on - strand, within Shewana3_0445 at 521.193 kb on + strand, within Shewana3_0445 at 521.253 kb on - strand, within Shewana3_0445 at 521.343 kb on - strand, within Shewana3_0446 at 521.369 kb on + strand, within Shewana3_0446 at 521.369 kb on + strand, within Shewana3_0446 at 521.375 kb on + strand, within Shewana3_0446 at 521.375 kb on + strand, within Shewana3_0446 at 521.377 kb on - strand, within Shewana3_0446 at 521.438 kb on - strand, within Shewana3_0446 at 521.571 kb on - strand at 521.627 kb on + strand at 521.698 kb on + strand at 521.729 kb on - strand at 521.808 kb on - strand, within Shewana3_0447 at 522.044 kb on + strand, within Shewana3_0447 at 522.090 kb on + strand, within Shewana3_0447 at 522.140 kb on - strand, within Shewana3_0447 at 522.320 kb on + strand, within Shewana3_0447 at 522.342 kb on - strand, within Shewana3_0447 at 522.343 kb on - strand, within Shewana3_0447 at 522.458 kb on + strand, within Shewana3_0447 at 522.469 kb on + strand, within Shewana3_0447 at 522.477 kb on - strand, within Shewana3_0447 at 522.531 kb on - strand, within Shewana3_0447 at 522.547 kb on - strand, within Shewana3_0447 at 522.745 kb on - strand, within Shewana3_0447 at 523.184 kb on + strand at 523.467 kb on + strand, within Shewana3_0448 at 523.509 kb on - strand, within Shewana3_0448 at 523.532 kb on + strand, within Shewana3_0448 at 523.661 kb on + strand, within Shewana3_0448 at 523.667 kb on - strand, within Shewana3_0448 at 523.667 kb on - strand, within Shewana3_0448 at 523.747 kb on + strand, within Shewana3_0448 at 523.815 kb on - strand, within Shewana3_0448
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 521,000 + +0.9 521,159 - Shewana3_0445 0.49 -0.1 521,193 + Shewana3_0445 0.63 +0.1 521,253 - Shewana3_0445 0.86 +0.3 521,343 - Shewana3_0446 0.18 -0.2 521,369 + Shewana3_0446 0.27 -1.6 521,369 + Shewana3_0446 0.27 -0.3 521,375 + Shewana3_0446 0.29 -0.2 521,375 + Shewana3_0446 0.29 -0.3 521,377 - Shewana3_0446 0.30 -0.5 521,438 - Shewana3_0446 0.51 -1.6 521,571 - -0.4 521,627 + +1.5 521,698 + +2.8 521,729 - -0.6 521,808 - Shewana3_0447 0.14 -0.2 522,044 + Shewana3_0447 0.28 -0.1 522,090 + Shewana3_0447 0.31 -0.1 522,140 - Shewana3_0447 0.34 -1.1 522,320 + Shewana3_0447 0.45 -0.0 522,342 - Shewana3_0447 0.47 -1.1 522,343 - Shewana3_0447 0.47 +3.6 522,458 + Shewana3_0447 0.54 -0.2 522,469 + Shewana3_0447 0.54 -0.2 522,477 - Shewana3_0447 0.55 -0.5 522,531 - Shewana3_0447 0.58 +1.4 522,547 - Shewana3_0447 0.59 -1.1 522,745 - Shewana3_0447 0.71 -1.7 523,184 + +0.0 523,467 + Shewana3_0448 0.18 -1.1 523,509 - Shewana3_0448 0.21 -0.2 523,532 + Shewana3_0448 0.23 -1.3 523,661 + Shewana3_0448 0.34 -0.1 523,667 - Shewana3_0448 0.35 -0.0 523,667 - Shewana3_0448 0.35 +0.6 523,747 + Shewana3_0448 0.42 -0.2 523,815 - Shewana3_0448 0.47 -1.2
Or see this region's nucleotide sequence