Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0377 and Shewana3_0378 are separated by 18 nucleotides Shewana3_0378 and Shewana3_0379 overlap by 4 nucleotides Shewana3_0379 and Shewana3_0380 are separated by 26 nucleotides
Shewana3_0377: Shewana3_0377 - hypothetical protein (RefSeq), at 418,996 to 419,703
_0377
Shewana3_0378: Shewana3_0378 - OmpA/MotB domain-containing protein (RefSeq), at 419,722 to 420,330
_0378
Shewana3_0379: Shewana3_0379 - TolC family type I secretion outer membrane protein (RefSeq), at 420,327 to 421,742
_0379
Shewana3_0380: Shewana3_0380 - HlyD family type I secretion membrane fusion protein (RefSeq), at 421,769 to 423,151
_0380
Position (kb) 420
421
422 Strain fitness (log2 ratio) -2
-1
0
1 at 419.558 kb on - strand, within Shewana3_0377 at 419.560 kb on - strand, within Shewana3_0377 at 419.685 kb on + strand at 419.763 kb on + strand at 419.888 kb on - strand, within Shewana3_0378 at 420.071 kb on + strand, within Shewana3_0378 at 420.154 kb on - strand, within Shewana3_0378 at 420.201 kb on - strand, within Shewana3_0378 at 420.386 kb on + strand at 420.646 kb on + strand, within Shewana3_0379 at 420.692 kb on + strand, within Shewana3_0379 at 421.273 kb on + strand, within Shewana3_0379 at 421.281 kb on - strand, within Shewana3_0379 at 421.302 kb on + strand, within Shewana3_0379 at 421.331 kb on + strand, within Shewana3_0379 at 421.492 kb on + strand, within Shewana3_0379 at 421.579 kb on + strand, within Shewana3_0379 at 421.711 kb on + strand at 421.737 kb on - strand at 421.800 kb on - strand at 421.920 kb on - strand, within Shewana3_0380 at 422.302 kb on - strand, within Shewana3_0380 at 422.360 kb on + strand, within Shewana3_0380 at 422.368 kb on - strand, within Shewana3_0380 at 422.385 kb on - strand, within Shewana3_0380 at 422.400 kb on - strand, within Shewana3_0380 at 422.495 kb on - strand, within Shewana3_0380 at 422.629 kb on - strand, within Shewana3_0380
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 419,558 - Shewana3_0377 0.79 -1.0 419,560 - Shewana3_0377 0.80 -0.1 419,685 + +0.4 419,763 + -1.1 419,888 - Shewana3_0378 0.27 -0.2 420,071 + Shewana3_0378 0.57 -1.1 420,154 - Shewana3_0378 0.71 +0.1 420,201 - Shewana3_0378 0.79 -0.1 420,386 + -0.4 420,646 + Shewana3_0379 0.23 -2.7 420,692 + Shewana3_0379 0.26 -1.1 421,273 + Shewana3_0379 0.67 -1.4 421,281 - Shewana3_0379 0.67 -1.3 421,302 + Shewana3_0379 0.69 -1.2 421,331 + Shewana3_0379 0.71 -1.2 421,492 + Shewana3_0379 0.82 -1.3 421,579 + Shewana3_0379 0.88 -1.0 421,711 + -1.2 421,737 - -0.3 421,800 - +0.1 421,920 - Shewana3_0380 0.11 -1.2 422,302 - Shewana3_0380 0.39 -0.5 422,360 + Shewana3_0380 0.43 -0.4 422,368 - Shewana3_0380 0.43 -0.4 422,385 - Shewana3_0380 0.45 -0.1 422,400 - Shewana3_0380 0.46 -0.0 422,495 - Shewana3_0380 0.52 +0.2 422,629 - Shewana3_0380 0.62 -1.1
Or see this region's nucleotide sequence