Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0372

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0371 and Shewana3_0372 are separated by 13 nucleotidesShewana3_0372 and Shewana3_0373 are separated by 25 nucleotidesShewana3_0373 and Shewana3_0374 are separated by 323 nucleotides Shewana3_0371: Shewana3_0371 - acriflavin resistance protein (RefSeq), at 406,431 to 409,520 _0371 Shewana3_0372: Shewana3_0372 - RND family efflux transporter MFP subunit (RefSeq), at 409,534 to 410,652 _0372 Shewana3_0373: Shewana3_0373 - TetR family transcriptional regulator (RefSeq), at 410,678 to 411,244 _0373 Shewana3_0374: Shewana3_0374 - ATP-dependent DNA helicase Rep (RefSeq), at 411,568 to 413,583 _0374 Position (kb) 409 410 411Strain fitness (log2 ratio) -2 -1 0 1at 408.558 kb on + strand, within Shewana3_0371at 408.665 kb on + strand, within Shewana3_0371at 408.806 kb on + strand, within Shewana3_0371at 408.961 kb on - strand, within Shewana3_0371at 409.106 kb on + strand, within Shewana3_0371at 409.114 kb on - strand, within Shewana3_0371at 409.166 kb on + strand, within Shewana3_0371at 409.166 kb on + strand, within Shewana3_0371at 409.174 kb on - strand, within Shewana3_0371at 409.225 kb on + strandat 409.233 kb on - strandat 409.233 kb on - strandat 409.233 kb on - strandat 409.280 kb on - strandat 409.312 kb on - strandat 409.482 kb on + strandat 409.530 kb on - strandat 409.550 kb on + strandat 409.561 kb on + strandat 409.569 kb on - strandat 409.686 kb on + strand, within Shewana3_0372at 409.712 kb on + strand, within Shewana3_0372at 409.755 kb on + strand, within Shewana3_0372at 409.763 kb on - strand, within Shewana3_0372at 409.776 kb on + strand, within Shewana3_0372at 409.970 kb on + strand, within Shewana3_0372at 409.978 kb on - strand, within Shewana3_0372at 409.978 kb on - strand, within Shewana3_0372at 410.019 kb on + strand, within Shewana3_0372at 410.290 kb on + strand, within Shewana3_0372at 410.495 kb on - strand, within Shewana3_0372at 410.583 kb on + strandat 410.583 kb on + strandat 410.583 kb on + strandat 410.583 kb on + strandat 410.583 kb on + strandat 410.591 kb on - strandat 410.591 kb on - strandat 410.591 kb on - strandat 410.606 kb on + strandat 410.616 kb on - strandat 410.654 kb on + strandat 410.796 kb on - strand, within Shewana3_0373at 410.930 kb on + strand, within Shewana3_0373at 410.948 kb on + strand, within Shewana3_0373at 411.030 kb on + strand, within Shewana3_0373at 411.083 kb on - strand, within Shewana3_0373at 411.220 kb on + strandat 411.220 kb on + strandat 411.222 kb on + strandat 411.226 kb on - strandat 411.378 kb on + strandat 411.433 kb on + strandat 411.449 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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408,558 + Shewana3_0371 0.69 -0.2
408,665 + Shewana3_0371 0.72 +0.3
408,806 + Shewana3_0371 0.77 +0.2
408,961 - Shewana3_0371 0.82 -0.4
409,106 + Shewana3_0371 0.87 -0.7
409,114 - Shewana3_0371 0.87 -0.9
409,166 + Shewana3_0371 0.89 -0.5
409,166 + Shewana3_0371 0.89 +0.5
409,174 - Shewana3_0371 0.89 -1.0
409,225 + -0.7
409,233 - -0.2
409,233 - -0.3
409,233 - -0.9
409,280 - -0.1
409,312 - -0.2
409,482 + -0.2
409,530 - -0.5
409,550 + -2.5
409,561 + -0.8
409,569 - +0.7
409,686 + Shewana3_0372 0.14 -1.8
409,712 + Shewana3_0372 0.16 -1.1
409,755 + Shewana3_0372 0.20 -0.4
409,763 - Shewana3_0372 0.20 +0.7
409,776 + Shewana3_0372 0.22 -0.1
409,970 + Shewana3_0372 0.39 +0.0
409,978 - Shewana3_0372 0.40 -0.6
409,978 - Shewana3_0372 0.40 -1.4
410,019 + Shewana3_0372 0.43 -2.1
410,290 + Shewana3_0372 0.68 -0.7
410,495 - Shewana3_0372 0.86 -1.6
410,583 + -0.4
410,583 + -0.5
410,583 + -0.3
410,583 + +0.2
410,583 + -0.9
410,591 - -0.2
410,591 - -0.7
410,591 - -0.3
410,606 + -0.5
410,616 - -0.2
410,654 + -0.8
410,796 - Shewana3_0373 0.21 +0.8
410,930 + Shewana3_0373 0.44 +0.3
410,948 + Shewana3_0373 0.48 +0.3
411,030 + Shewana3_0373 0.62 +0.6
411,083 - Shewana3_0373 0.71 +0.5
411,220 + -2.6
411,220 + -0.2
411,222 + +0.1
411,226 - +1.1
411,378 + +0.1
411,433 + +0.4
411,449 - -0.1

Or see this region's nucleotide sequence