Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0271

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0269 and Shewana3_0270 are separated by 117 nucleotidesShewana3_0270 and Shewana3_0271 are separated by 36 nucleotidesShewana3_0271 and Shewana3_0272 are separated by 81 nucleotides Shewana3_0269: Shewana3_0269 - diguanylate cyclase (RefSeq), at 302,810 to 304,267 _0269 Shewana3_0270: Shewana3_0270 - MOSC domain-containing protein (RefSeq), at 304,385 to 305,080 _0270 Shewana3_0271: Shewana3_0271 - hypothetical protein (RefSeq), at 305,117 to 305,473 _0271 Shewana3_0272: Shewana3_0272 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 305,555 to 307,471 _0272 Position (kb) 305 306Strain fitness (log2 ratio) -2 -1 0 1at 304.149 kb on + strandat 304.149 kb on + strandat 304.157 kb on - strandat 304.272 kb on - strandat 304.352 kb on + strandat 304.536 kb on + strand, within Shewana3_0270at 304.603 kb on - strand, within Shewana3_0270at 304.795 kb on - strand, within Shewana3_0270at 304.804 kb on + strand, within Shewana3_0270at 304.880 kb on - strand, within Shewana3_0270at 304.880 kb on - strand, within Shewana3_0270at 305.104 kb on - strandat 305.437 kb on - strand, within Shewana3_0271at 305.554 kb on - strandat 305.608 kb on + strandat 305.688 kb on - strandat 305.758 kb on + strand, within Shewana3_0272at 305.758 kb on + strand, within Shewana3_0272at 305.837 kb on + strand, within Shewana3_0272at 305.845 kb on - strand, within Shewana3_0272at 305.845 kb on - strand, within Shewana3_0272at 305.845 kb on - strand, within Shewana3_0272at 305.929 kb on + strand, within Shewana3_0272at 305.974 kb on - strand, within Shewana3_0272at 306.085 kb on - strand, within Shewana3_0272at 306.085 kb on - strand, within Shewana3_0272at 306.085 kb on - strand, within Shewana3_0272at 306.255 kb on - strand, within Shewana3_0272at 306.377 kb on - strand, within Shewana3_0272

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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304,149 + -0.6
304,149 + +0.2
304,157 - -0.7
304,272 - -0.8
304,352 + -0.6
304,536 + Shewana3_0270 0.22 -1.1
304,603 - Shewana3_0270 0.31 -0.8
304,795 - Shewana3_0270 0.59 -0.4
304,804 + Shewana3_0270 0.60 -0.7
304,880 - Shewana3_0270 0.71 -1.6
304,880 - Shewana3_0270 0.71 -0.2
305,104 - -0.4
305,437 - Shewana3_0271 0.90 -2.4
305,554 - +0.5
305,608 + -0.3
305,688 - -0.2
305,758 + Shewana3_0272 0.11 -0.7
305,758 + Shewana3_0272 0.11 -0.6
305,837 + Shewana3_0272 0.15 +0.5
305,845 - Shewana3_0272 0.15 -0.6
305,845 - Shewana3_0272 0.15 +0.3
305,845 - Shewana3_0272 0.15 -0.0
305,929 + Shewana3_0272 0.20 -1.1
305,974 - Shewana3_0272 0.22 +0.5
306,085 - Shewana3_0272 0.28 -0.1
306,085 - Shewana3_0272 0.28 -0.4
306,085 - Shewana3_0272 0.28 +0.3
306,255 - Shewana3_0272 0.37 -0.2
306,377 - Shewana3_0272 0.43 -1.0

Or see this region's nucleotide sequence