Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0256 and Shewana3_0257 are separated by 186 nucleotides Shewana3_0257 and Shewana3_0258 are separated by 213 nucleotides Shewana3_0258 and Shewana3_0259 are separated by 43 nucleotides
Shewana3_0256: Shewana3_0256 - hypothetical protein (RefSeq), at 287,807 to 288,217
_0256
Shewana3_0257: Shewana3_0257 - outer membrane protein, putative (RefSeq), at 288,404 to 288,817
_0257
Shewana3_0258: Shewana3_0258 - nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq), at 289,031 to 290,440
_0258
Shewana3_0259: Shewana3_0259 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 290,484 to 291,530
_0259
Position (kb) 289
290
291 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 288.055 kb on - strand, within Shewana3_0256 at 288.093 kb on + strand, within Shewana3_0256 at 288.101 kb on - strand, within Shewana3_0256 at 288.101 kb on - strand, within Shewana3_0256 at 288.102 kb on + strand, within Shewana3_0256 at 288.102 kb on + strand, within Shewana3_0256 at 288.110 kb on - strand, within Shewana3_0256 at 288.138 kb on + strand, within Shewana3_0256 at 288.157 kb on - strand, within Shewana3_0256 at 288.157 kb on - strand, within Shewana3_0256 at 288.384 kb on - strand at 288.389 kb on - strand at 288.460 kb on + strand, within Shewana3_0257 at 288.473 kb on + strand, within Shewana3_0257 at 288.518 kb on + strand, within Shewana3_0257 at 288.519 kb on + strand, within Shewana3_0257 at 288.526 kb on - strand, within Shewana3_0257 at 288.526 kb on - strand, within Shewana3_0257 at 288.528 kb on - strand, within Shewana3_0257 at 288.550 kb on - strand, within Shewana3_0257 at 288.562 kb on - strand, within Shewana3_0257 at 288.706 kb on + strand, within Shewana3_0257 at 288.818 kb on - strand at 288.835 kb on + strand at 289.090 kb on - strand at 289.124 kb on + strand at 289.124 kb on + strand at 289.132 kb on - strand at 289.132 kb on - strand at 289.137 kb on - strand at 289.211 kb on + strand, within Shewana3_0258 at 289.269 kb on - strand, within Shewana3_0258 at 289.286 kb on - strand, within Shewana3_0258 at 289.388 kb on - strand, within Shewana3_0258 at 289.388 kb on - strand, within Shewana3_0258 at 289.471 kb on + strand, within Shewana3_0258 at 290.074 kb on - strand, within Shewana3_0258 at 290.091 kb on - strand, within Shewana3_0258 at 290.131 kb on - strand, within Shewana3_0258 at 290.170 kb on + strand, within Shewana3_0258 at 290.188 kb on - strand, within Shewana3_0258 at 290.188 kb on - strand, within Shewana3_0258 at 290.188 kb on - strand, within Shewana3_0258 at 290.188 kb on - strand, within Shewana3_0258 at 290.199 kb on + strand, within Shewana3_0258 at 290.251 kb on + strand, within Shewana3_0258 at 290.251 kb on + strand, within Shewana3_0258 at 290.251 kb on + strand, within Shewana3_0258 at 290.251 kb on + strand, within Shewana3_0258 at 290.251 kb on + strand, within Shewana3_0258 at 290.259 kb on - strand, within Shewana3_0258 at 290.259 kb on - strand, within Shewana3_0258 at 290.297 kb on - strand, within Shewana3_0258 at 290.357 kb on + strand at 290.528 kb on + strand at 290.536 kb on - strand at 290.597 kb on - strand, within Shewana3_0259 at 290.626 kb on + strand, within Shewana3_0259 at 290.632 kb on + strand, within Shewana3_0259 at 290.640 kb on - strand, within Shewana3_0259 at 290.640 kb on - strand, within Shewana3_0259 at 290.640 kb on - strand, within Shewana3_0259 at 290.675 kb on - strand, within Shewana3_0259 at 290.694 kb on + strand, within Shewana3_0259 at 290.699 kb on + strand, within Shewana3_0259 at 290.707 kb on - strand, within Shewana3_0259 at 290.707 kb on - strand, within Shewana3_0259 at 290.707 kb on - strand, within Shewana3_0259 at 290.778 kb on + strand, within Shewana3_0259 at 290.785 kb on - strand, within Shewana3_0259 at 290.947 kb on - strand, within Shewana3_0259 at 291.083 kb on + strand, within Shewana3_0259 at 291.091 kb on - strand, within Shewana3_0259 at 291.236 kb on - strand, within Shewana3_0259 at 291.236 kb on - strand, within Shewana3_0259 at 291.324 kb on + strand, within Shewana3_0259
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 288,055 - Shewana3_0256 0.60 -0.9 288,093 + Shewana3_0256 0.70 -2.8 288,101 - Shewana3_0256 0.72 +0.6 288,101 - Shewana3_0256 0.72 -0.5 288,102 + Shewana3_0256 0.72 -1.6 288,102 + Shewana3_0256 0.72 -1.1 288,110 - Shewana3_0256 0.74 -0.9 288,138 + Shewana3_0256 0.81 -0.9 288,157 - Shewana3_0256 0.85 -0.1 288,157 - Shewana3_0256 0.85 -1.3 288,384 - -0.3 288,389 - +0.1 288,460 + Shewana3_0257 0.14 -0.5 288,473 + Shewana3_0257 0.17 +0.3 288,518 + Shewana3_0257 0.28 -0.1 288,519 + Shewana3_0257 0.28 -0.1 288,526 - Shewana3_0257 0.29 -2.2 288,526 - Shewana3_0257 0.29 -0.1 288,528 - Shewana3_0257 0.30 -1.2 288,550 - Shewana3_0257 0.35 -3.8 288,562 - Shewana3_0257 0.38 +0.6 288,706 + Shewana3_0257 0.73 -0.3 288,818 - -0.6 288,835 + +0.9 289,090 - +1.3 289,124 + +0.7 289,124 + +0.4 289,132 - +1.0 289,132 - +1.0 289,137 - +5.6 289,211 + Shewana3_0258 0.13 +0.5 289,269 - Shewana3_0258 0.17 +2.7 289,286 - Shewana3_0258 0.18 +1.5 289,388 - Shewana3_0258 0.25 +1.7 289,388 - Shewana3_0258 0.25 +1.2 289,471 + Shewana3_0258 0.31 +1.0 290,074 - Shewana3_0258 0.74 +1.3 290,091 - Shewana3_0258 0.75 +3.8 290,131 - Shewana3_0258 0.78 +1.1 290,170 + Shewana3_0258 0.81 +1.1 290,188 - Shewana3_0258 0.82 +3.4 290,188 - Shewana3_0258 0.82 +0.9 290,188 - Shewana3_0258 0.82 +0.9 290,188 - Shewana3_0258 0.82 +1.1 290,199 + Shewana3_0258 0.83 +1.1 290,251 + Shewana3_0258 0.87 +1.1 290,251 + Shewana3_0258 0.87 +0.7 290,251 + Shewana3_0258 0.87 +0.8 290,251 + Shewana3_0258 0.87 +0.7 290,251 + Shewana3_0258 0.87 +1.4 290,259 - Shewana3_0258 0.87 +2.1 290,259 - Shewana3_0258 0.87 +0.7 290,297 - Shewana3_0258 0.90 +0.9 290,357 + +0.2 290,528 + +0.8 290,536 - +1.0 290,597 - Shewana3_0259 0.11 +1.6 290,626 + Shewana3_0259 0.14 +0.4 290,632 + Shewana3_0259 0.14 +0.9 290,640 - Shewana3_0259 0.15 +0.7 290,640 - Shewana3_0259 0.15 +0.8 290,640 - Shewana3_0259 0.15 +0.9 290,675 - Shewana3_0259 0.18 +1.0 290,694 + Shewana3_0259 0.20 +0.4 290,699 + Shewana3_0259 0.21 +1.4 290,707 - Shewana3_0259 0.21 +0.9 290,707 - Shewana3_0259 0.21 +0.9 290,707 - Shewana3_0259 0.21 +0.2 290,778 + Shewana3_0259 0.28 +1.7 290,785 - Shewana3_0259 0.29 +0.7 290,947 - Shewana3_0259 0.44 +1.4 291,083 + Shewana3_0259 0.57 +3.8 291,091 - Shewana3_0259 0.58 +4.3 291,236 - Shewana3_0259 0.72 +1.1 291,236 - Shewana3_0259 0.72 +1.8 291,324 + Shewana3_0259 0.80 +1.0
Or see this region's nucleotide sequence