Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0197

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0196 and Shewana3_0197 are separated by 71 nucleotidesShewana3_0197 and rpsJ are separated by 337 nucleotidesrpsJ and rplC are separated by 27 nucleotides Shewana3_0196: Shewana3_0196 - elongation factor G (RefSeq), at 239,609 to 241,705 _0196 Shewana3_0197: Shewana3_0197 - elongation factor Tu (RefSeq), at 241,777 to 242,961 _0197 Shewana3_0198: rpsJ - 30S ribosomal protein S10 (RefSeq), at 243,299 to 243,610 rpsJ Shewana3_0199: rplC - 50S ribosomal protein L3 (RefSeq), at 243,638 to 244,276 rplC Position (kb) 241 242 243Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 241.733 kb on + strandat 241.977 kb on + strand, within Shewana3_0197at 242.019 kb on - strand, within Shewana3_0197at 243.035 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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241,733 + +3.5
241,977 + Shewana3_0197 0.17 +4.3
242,019 - Shewana3_0197 0.20 -2.0
243,035 - -0.5

Or see this region's nucleotide sequence