Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0159 and Shewana3_0160 are separated by 1 nucleotides Shewana3_0160 and Shewana3_0161 are separated by 14 nucleotides Shewana3_0161 and Shewana3_0162 are separated by 63 nucleotides Shewana3_0162 and Shewana3_0163 are separated by 105 nucleotides
Shewana3_0159: Shewana3_0159 - general secretion pathway protein L (RefSeq), at 183,125 to 184,312
_0159
Shewana3_0160: Shewana3_0160 - general secretion pathway M protein (RefSeq), at 184,314 to 184,790
_0160
Shewana3_0161: Shewana3_0161 - type II secretion system protein N (RefSeq), at 184,805 to 185,566
_0161
Shewana3_0162: Shewana3_0162 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 185,630 to 186,292
_0162
Shewana3_0163: Shewana3_0163 - aspartyl/asparaginyl beta-hydroxylase (RefSeq), at 186,398 to 187,012
_0163
Position (kb) 184
185
186 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 183.805 kb on + strand, within Shewana3_0159 at 183.893 kb on + strand, within Shewana3_0159 at 183.893 kb on + strand, within Shewana3_0159 at 183.893 kb on + strand, within Shewana3_0159 at 183.893 kb on + strand, within Shewana3_0159 at 183.901 kb on - strand, within Shewana3_0159 at 183.921 kb on - strand, within Shewana3_0159 at 183.964 kb on + strand, within Shewana3_0159 at 184.020 kb on - strand, within Shewana3_0159 at 184.049 kb on + strand, within Shewana3_0159 at 184.057 kb on - strand, within Shewana3_0159 at 184.057 kb on - strand, within Shewana3_0159 at 184.107 kb on + strand, within Shewana3_0159 at 184.107 kb on + strand, within Shewana3_0159 at 184.115 kb on - strand, within Shewana3_0159 at 184.115 kb on - strand, within Shewana3_0159 at 184.467 kb on - strand, within Shewana3_0160 at 184.472 kb on + strand, within Shewana3_0160 at 184.472 kb on + strand, within Shewana3_0160 at 184.558 kb on + strand, within Shewana3_0160 at 184.558 kb on + strand, within Shewana3_0160 at 184.558 kb on + strand, within Shewana3_0160 at 184.558 kb on + strand, within Shewana3_0160 at 184.558 kb on + strand, within Shewana3_0160 at 184.566 kb on - strand, within Shewana3_0160 at 184.576 kb on + strand, within Shewana3_0160 at 184.627 kb on - strand, within Shewana3_0160 at 184.723 kb on + strand, within Shewana3_0160 at 184.947 kb on - strand, within Shewana3_0161 at 185.077 kb on - strand, within Shewana3_0161 at 185.108 kb on + strand, within Shewana3_0161 at 185.146 kb on + strand, within Shewana3_0161 at 185.174 kb on - strand, within Shewana3_0161 at 185.375 kb on - strand, within Shewana3_0161 at 185.490 kb on - strand at 185.529 kb on + strand at 185.890 kb on + strand, within Shewana3_0162 at 185.923 kb on + strand, within Shewana3_0162 at 185.937 kb on + strand, within Shewana3_0162 at 185.937 kb on + strand, within Shewana3_0162 at 185.945 kb on - strand, within Shewana3_0162 at 186.049 kb on - strand, within Shewana3_0162 at 186.122 kb on - strand, within Shewana3_0162 at 186.171 kb on - strand, within Shewana3_0162 at 186.171 kb on - strand, within Shewana3_0162 at 186.270 kb on - strand at 186.406 kb on + strand at 186.552 kb on - strand, within Shewana3_0163 at 186.563 kb on + strand, within Shewana3_0163
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 183,805 + Shewana3_0159 0.57 +1.1 183,893 + Shewana3_0159 0.65 +0.3 183,893 + Shewana3_0159 0.65 -0.5 183,893 + Shewana3_0159 0.65 +0.2 183,893 + Shewana3_0159 0.65 +0.1 183,901 - Shewana3_0159 0.65 +0.5 183,921 - Shewana3_0159 0.67 +0.4 183,964 + Shewana3_0159 0.71 +0.5 184,020 - Shewana3_0159 0.75 +1.4 184,049 + Shewana3_0159 0.78 -1.1 184,057 - Shewana3_0159 0.78 +0.9 184,057 - Shewana3_0159 0.78 -2.1 184,107 + Shewana3_0159 0.83 +1.1 184,107 + Shewana3_0159 0.83 +0.7 184,115 - Shewana3_0159 0.83 -0.7 184,115 - Shewana3_0159 0.83 +2.9 184,467 - Shewana3_0160 0.32 -0.1 184,472 + Shewana3_0160 0.33 +0.7 184,472 + Shewana3_0160 0.33 -1.5 184,558 + Shewana3_0160 0.51 +1.9 184,558 + Shewana3_0160 0.51 -0.6 184,558 + Shewana3_0160 0.51 +0.8 184,558 + Shewana3_0160 0.51 +0.1 184,558 + Shewana3_0160 0.51 -1.7 184,566 - Shewana3_0160 0.53 +1.2 184,576 + Shewana3_0160 0.55 +1.2 184,627 - Shewana3_0160 0.66 +0.4 184,723 + Shewana3_0160 0.86 +0.9 184,947 - Shewana3_0161 0.19 +0.3 185,077 - Shewana3_0161 0.36 -0.3 185,108 + Shewana3_0161 0.40 +0.7 185,146 + Shewana3_0161 0.45 +0.4 185,174 - Shewana3_0161 0.48 +1.3 185,375 - Shewana3_0161 0.75 +1.2 185,490 - -0.2 185,529 + -0.2 185,890 + Shewana3_0162 0.39 +0.3 185,923 + Shewana3_0162 0.44 -3.0 185,937 + Shewana3_0162 0.46 -1.4 185,937 + Shewana3_0162 0.46 +0.1 185,945 - Shewana3_0162 0.48 -0.1 186,049 - Shewana3_0162 0.63 -0.1 186,122 - Shewana3_0162 0.74 -0.8 186,171 - Shewana3_0162 0.82 +0.1 186,171 - Shewana3_0162 0.82 +0.0 186,270 - -0.2 186,406 + -0.5 186,552 - Shewana3_0163 0.25 -0.3 186,563 + Shewana3_0163 0.27 -2.0
Or see this region's nucleotide sequence