Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0149

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthslO and Shewana3_0149 are separated by 36 nucleotidesShewana3_0149 and Shewana3_0150 are separated by 251 nucleotides Shewana3_0148: hslO - Hsp33-like chaperonin (RefSeq), at 172,505 to 173,365 hslO Shewana3_0149: Shewana3_0149 - RNA-binding S4 domain-containing protein (RefSeq), at 173,402 to 173,800 _0149 Shewana3_0150: Shewana3_0150 - general secretion pathway protein C (RefSeq), at 174,052 to 174,978 _0150 Position (kb) 173 174Strain fitness (log2 ratio) -1 0 1 2 3 4at 172.479 kb on - strandat 172.491 kb on - strandat 172.596 kb on - strand, within hslOat 172.671 kb on - strand, within hslOat 172.933 kb on + strand, within hslOat 172.933 kb on + strand, within hslOat 172.951 kb on - strand, within hslOat 173.029 kb on + strand, within hslOat 173.029 kb on + strand, within hslOat 173.037 kb on - strand, within hslOat 173.092 kb on + strand, within hslOat 173.100 kb on - strand, within hslOat 173.151 kb on + strand, within hslOat 173.615 kb on + strand, within Shewana3_0149at 173.771 kb on - strandat 173.790 kb on - strandat 173.961 kb on - strandat 174.039 kb on - strandat 174.081 kb on + strandat 174.272 kb on + strand, within Shewana3_0150at 174.335 kb on - strand, within Shewana3_0150at 174.335 kb on - strand, within Shewana3_0150at 174.465 kb on + strand, within Shewana3_0150at 174.473 kb on - strand, within Shewana3_0150at 174.561 kb on + strand, within Shewana3_0150at 174.564 kb on - strand, within Shewana3_0150at 174.694 kb on + strand, within Shewana3_0150at 174.701 kb on - strand, within Shewana3_0150at 174.800 kb on + strand, within Shewana3_0150

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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172,479 - -0.2
172,491 - +0.0
172,596 - hslO Shewana3_0148 0.11 +0.8
172,671 - hslO Shewana3_0148 0.19 +4.5
172,933 + hslO Shewana3_0148 0.50 +0.8
172,933 + hslO Shewana3_0148 0.50 +1.1
172,951 - hslO Shewana3_0148 0.52 +0.7
173,029 + hslO Shewana3_0148 0.61 +0.7
173,029 + hslO Shewana3_0148 0.61 +0.3
173,037 - hslO Shewana3_0148 0.62 +4.2
173,092 + hslO Shewana3_0148 0.68 +0.9
173,100 - hslO Shewana3_0148 0.69 +1.0
173,151 + hslO Shewana3_0148 0.75 +1.0
173,615 + Shewana3_0149 0.53 +0.7
173,771 - -0.2
173,790 - +0.6
173,961 - -0.5
174,039 - +0.7
174,081 + +0.9
174,272 + Shewana3_0150 0.24 +0.1
174,335 - Shewana3_0150 0.31 +1.0
174,335 - Shewana3_0150 0.31 +1.2
174,465 + Shewana3_0150 0.45 +0.7
174,473 - Shewana3_0150 0.45 +0.6
174,561 + Shewana3_0150 0.55 -0.4
174,564 - Shewana3_0150 0.55 +1.1
174,694 + Shewana3_0150 0.69 +1.4
174,701 - Shewana3_0150 0.70 -0.3
174,800 + Shewana3_0150 0.81 +0.0

Or see this region's nucleotide sequence