Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0147 and hslO are separated by 202 nucleotides hslO and Shewana3_0149 are separated by 36 nucleotides Shewana3_0149 and Shewana3_0150 are separated by 251 nucleotides
Shewana3_0147: Shewana3_0147 - phosphoenolpyruvate carboxykinase (RefSeq), at 170,761 to 172,302
_0147
Shewana3_0148: hslO - Hsp33-like chaperonin (RefSeq), at 172,505 to 173,365
hslO
Shewana3_0149: Shewana3_0149 - RNA-binding S4 domain-containing protein (RefSeq), at 173,402 to 173,800
_0149
Shewana3_0150: Shewana3_0150 - general secretion pathway protein C (RefSeq), at 174,052 to 174,978
_0150
Position (kb) 172
173
174 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 171.622 kb on + strand, within Shewana3_0147 at 171.640 kb on - strand, within Shewana3_0147 at 171.654 kb on + strand, within Shewana3_0147 at 171.735 kb on - strand, within Shewana3_0147 at 171.958 kb on - strand, within Shewana3_0147 at 171.966 kb on - strand, within Shewana3_0147 at 172.062 kb on + strand, within Shewana3_0147 at 172.130 kb on + strand, within Shewana3_0147 at 172.224 kb on - strand at 172.252 kb on + strand at 172.270 kb on + strand at 172.309 kb on - strand at 172.479 kb on - strand at 172.491 kb on - strand at 172.596 kb on - strand, within hslO at 172.671 kb on - strand, within hslO at 172.933 kb on + strand, within hslO at 172.933 kb on + strand, within hslO at 172.951 kb on - strand, within hslO at 173.029 kb on + strand, within hslO at 173.029 kb on + strand, within hslO at 173.037 kb on - strand, within hslO at 173.092 kb on + strand, within hslO at 173.100 kb on - strand, within hslO at 173.151 kb on + strand, within hslO at 173.615 kb on + strand, within Shewana3_0149 at 173.771 kb on - strand at 173.790 kb on - strand at 173.961 kb on - strand at 174.039 kb on - strand at 174.081 kb on + strand at 174.272 kb on + strand, within Shewana3_0150 at 174.335 kb on - strand, within Shewana3_0150 at 174.335 kb on - strand, within Shewana3_0150
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 171,622 + Shewana3_0147 0.56 -0.9 171,640 - Shewana3_0147 0.57 -0.1 171,654 + Shewana3_0147 0.58 -2.2 171,735 - Shewana3_0147 0.63 +0.0 171,958 - Shewana3_0147 0.78 -0.9 171,966 - Shewana3_0147 0.78 +0.3 172,062 + Shewana3_0147 0.84 -0.3 172,130 + Shewana3_0147 0.89 -1.4 172,224 - -0.4 172,252 + -0.8 172,270 + -0.1 172,309 - -0.6 172,479 - -0.2 172,491 - +0.0 172,596 - hslO Shewana3_0148 0.11 +0.8 172,671 - hslO Shewana3_0148 0.19 +4.5 172,933 + hslO Shewana3_0148 0.50 +0.8 172,933 + hslO Shewana3_0148 0.50 +1.1 172,951 - hslO Shewana3_0148 0.52 +0.7 173,029 + hslO Shewana3_0148 0.61 +0.7 173,029 + hslO Shewana3_0148 0.61 +0.3 173,037 - hslO Shewana3_0148 0.62 +4.2 173,092 + hslO Shewana3_0148 0.68 +0.9 173,100 - hslO Shewana3_0148 0.69 +1.0 173,151 + hslO Shewana3_0148 0.75 +1.0 173,615 + Shewana3_0149 0.53 +0.7 173,771 - -0.2 173,790 - +0.6 173,961 - -0.5 174,039 - +0.7 174,081 + +0.9 174,272 + Shewana3_0150 0.24 +0.1 174,335 - Shewana3_0150 0.31 +1.0 174,335 - Shewana3_0150 0.31 +1.2
Or see this region's nucleotide sequence