Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0083 and Shewana3_0084 are separated by 20 nucleotides Shewana3_0084 and Shewana3_0085 are separated by 59 nucleotides Shewana3_0085 and Shewana3_0086 are separated by 160 nucleotides Shewana3_0086 and Shewana3_0087 are separated by 71 nucleotides
Shewana3_0083: Shewana3_0083 - HPP family protein (RefSeq), at 97,540 to 98,088
_0083
Shewana3_0084: Shewana3_0084 - hypothetical protein (RefSeq), at 98,109 to 98,372
_0084
Shewana3_0085: Shewana3_0085 - thioesterase superfamily protein (RefSeq), at 98,432 to 98,896
_0085
Shewana3_0086: Shewana3_0086 - MerR family transcriptional regulator (RefSeq), at 99,057 to 99,410
_0086
Shewana3_0087: Shewana3_0087 - NAD(P)H dehydrogenase (quinone) (RefSeq), at 99,482 to 100,060
_0087
Position (kb) 98
99 Strain fitness (log2 ratio) -1
0
1 at 97.575 kb on + strand at 97.575 kb on + strand at 97.688 kb on + strand, within Shewana3_0083 at 97.726 kb on + strand, within Shewana3_0083 at 97.726 kb on + strand, within Shewana3_0083 at 97.734 kb on - strand, within Shewana3_0083 at 97.789 kb on + strand, within Shewana3_0083 at 97.948 kb on + strand, within Shewana3_0083 at 98.072 kb on - strand at 98.175 kb on + strand, within Shewana3_0084 at 98.175 kb on + strand, within Shewana3_0084 at 98.504 kb on - strand, within Shewana3_0085 at 98.507 kb on + strand, within Shewana3_0085 at 98.586 kb on - strand, within Shewana3_0085 at 98.694 kb on + strand, within Shewana3_0085 at 98.830 kb on + strand, within Shewana3_0085 at 98.832 kb on + strand, within Shewana3_0085 at 98.837 kb on - strand, within Shewana3_0085 at 98.840 kb on - strand, within Shewana3_0085 at 98.990 kb on + strand at 99.008 kb on - strand at 99.126 kb on + strand, within Shewana3_0086 at 99.189 kb on - strand, within Shewana3_0086 at 99.267 kb on - strand, within Shewana3_0086 at 99.288 kb on + strand, within Shewana3_0086 at 99.449 kb on - strand at 99.449 kb on - strand at 99.751 kb on + strand, within Shewana3_0087 at 99.817 kb on - strand, within Shewana3_0087
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 97,575 + -0.7 97,575 + -0.3 97,688 + Shewana3_0083 0.27 +0.0 97,726 + Shewana3_0083 0.34 +0.1 97,726 + Shewana3_0083 0.34 -0.1 97,734 - Shewana3_0083 0.35 +0.6 97,789 + Shewana3_0083 0.45 -0.6 97,948 + Shewana3_0083 0.74 +0.4 98,072 - -0.5 98,175 + Shewana3_0084 0.25 -1.1 98,175 + Shewana3_0084 0.25 -0.8 98,504 - Shewana3_0085 0.15 -1.2 98,507 + Shewana3_0085 0.16 -0.8 98,586 - Shewana3_0085 0.33 -0.7 98,694 + Shewana3_0085 0.56 -0.9 98,830 + Shewana3_0085 0.86 -1.4 98,832 + Shewana3_0085 0.86 +0.7 98,837 - Shewana3_0085 0.87 -0.6 98,840 - Shewana3_0085 0.88 -0.5 98,990 + +0.2 99,008 - -0.5 99,126 + Shewana3_0086 0.19 -0.4 99,189 - Shewana3_0086 0.37 -0.9 99,267 - Shewana3_0086 0.59 -0.0 99,288 + Shewana3_0086 0.65 +0.0 99,449 - -0.4 99,449 - -0.4 99,751 + Shewana3_0087 0.46 -0.1 99,817 - Shewana3_0087 0.58 -0.6
Or see this region's nucleotide sequence