Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0037

Experiment: Cisplatin 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_0036 and Shewana3_0037 are separated by 83 nucleotidesShewana3_0037 and Shewana3_0038 are separated by 2 nucleotidesShewana3_0038 and Shewana3_0039 are separated by 122 nucleotides Shewana3_0036: Shewana3_0036 - peptidoglycan-binding LysM (RefSeq), at 42,976 to 44,100 _0036 Shewana3_0037: Shewana3_0037 - DNA protecting protein DprA (RefSeq), at 44,184 to 45,200 _0037 Shewana3_0038: Shewana3_0038 - hypothetical protein (RefSeq), at 45,203 to 45,679 _0038 Shewana3_0039: Shewana3_0039 - DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq), at 45,802 to 46,365 _0039 Position (kb) 44 45 46Strain fitness (log2 ratio) -2 -1 0 1 2at 43.247 kb on - strand, within Shewana3_0036at 43.247 kb on - strand, within Shewana3_0036at 43.247 kb on - strand, within Shewana3_0036at 43.247 kb on - strand, within Shewana3_0036at 43.247 kb on - strand, within Shewana3_0036at 43.292 kb on + strand, within Shewana3_0036at 43.292 kb on + strand, within Shewana3_0036at 43.300 kb on - strand, within Shewana3_0036at 43.300 kb on - strand, within Shewana3_0036at 43.302 kb on - strand, within Shewana3_0036at 43.359 kb on - strand, within Shewana3_0036at 43.366 kb on + strand, within Shewana3_0036at 43.439 kb on - strand, within Shewana3_0036at 43.485 kb on - strand, within Shewana3_0036at 43.517 kb on + strand, within Shewana3_0036at 43.543 kb on + strand, within Shewana3_0036at 43.543 kb on + strand, within Shewana3_0036at 43.681 kb on + strand, within Shewana3_0036at 43.719 kb on + strand, within Shewana3_0036at 43.719 kb on + strand, within Shewana3_0036at 43.719 kb on + strand, within Shewana3_0036at 43.719 kb on + strand, within Shewana3_0036at 43.719 kb on + strand, within Shewana3_0036at 43.722 kb on + strand, within Shewana3_0036at 43.727 kb on - strand, within Shewana3_0036at 43.727 kb on - strand, within Shewana3_0036at 43.727 kb on - strand, within Shewana3_0036at 43.727 kb on - strand, within Shewana3_0036at 43.727 kb on - strand, within Shewana3_0036at 43.727 kb on - strand, within Shewana3_0036at 43.727 kb on - strand, within Shewana3_0036at 43.727 kb on - strand, within Shewana3_0036at 43.727 kb on - strand, within Shewana3_0036at 43.727 kb on - strand, within Shewana3_0036at 43.809 kb on + strand, within Shewana3_0036at 43.817 kb on - strand, within Shewana3_0036at 43.884 kb on + strand, within Shewana3_0036at 43.884 kb on + strand, within Shewana3_0036at 43.892 kb on - strand, within Shewana3_0036at 43.892 kb on - strand, within Shewana3_0036at 43.909 kb on + strand, within Shewana3_0036at 43.945 kb on - strand, within Shewana3_0036at 43.981 kb on + strand, within Shewana3_0036at 44.047 kb on - strandat 44.078 kb on + strandat 44.093 kb on - strandat 44.183 kb on + strandat 44.187 kb on + strandat 44.258 kb on - strandat 44.261 kb on - strandat 44.319 kb on - strand, within Shewana3_0037at 44.348 kb on + strand, within Shewana3_0037at 44.356 kb on - strand, within Shewana3_0037at 44.410 kb on + strand, within Shewana3_0037at 44.452 kb on + strand, within Shewana3_0037at 44.496 kb on + strand, within Shewana3_0037at 44.504 kb on - strand, within Shewana3_0037at 44.573 kb on - strand, within Shewana3_0037at 44.583 kb on - strand, within Shewana3_0037at 44.614 kb on - strand, within Shewana3_0037at 44.777 kb on + strand, within Shewana3_0037at 44.812 kb on + strand, within Shewana3_0037at 44.919 kb on + strand, within Shewana3_0037at 44.937 kb on - strand, within Shewana3_0037at 45.006 kb on - strand, within Shewana3_0037at 45.182 kb on - strandat 45.375 kb on + strand, within Shewana3_0038at 45.490 kb on + strand, within Shewana3_0038at 45.527 kb on + strand, within Shewana3_0038at 45.652 kb on + strandat 45.660 kb on - strandat 45.660 kb on - strandat 45.830 kb on - strandat 45.867 kb on + strand, within Shewana3_0039at 45.874 kb on + strand, within Shewana3_0039at 45.982 kb on + strand, within Shewana3_0039at 46.005 kb on + strand, within Shewana3_0039at 46.038 kb on + strand, within Shewana3_0039at 46.106 kb on + strand, within Shewana3_0039at 46.122 kb on + strand, within Shewana3_0039at 46.128 kb on + strand, within Shewana3_0039at 46.130 kb on - strand, within Shewana3_0039at 46.137 kb on + strand, within Shewana3_0039at 46.171 kb on - strand, within Shewana3_0039

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
remove
43,247 - Shewana3_0036 0.24 +0.0
43,247 - Shewana3_0036 0.24 +0.1
43,247 - Shewana3_0036 0.24 -0.4
43,247 - Shewana3_0036 0.24 -0.2
43,247 - Shewana3_0036 0.24 -0.6
43,292 + Shewana3_0036 0.28 +0.7
43,292 + Shewana3_0036 0.28 +0.0
43,300 - Shewana3_0036 0.29 -0.0
43,300 - Shewana3_0036 0.29 -0.0
43,302 - Shewana3_0036 0.29 -0.5
43,359 - Shewana3_0036 0.34 -0.7
43,366 + Shewana3_0036 0.35 -0.0
43,439 - Shewana3_0036 0.41 -0.7
43,485 - Shewana3_0036 0.45 -0.1
43,517 + Shewana3_0036 0.48 -0.1
43,543 + Shewana3_0036 0.50 -0.1
43,543 + Shewana3_0036 0.50 -0.7
43,681 + Shewana3_0036 0.63 -0.1
43,719 + Shewana3_0036 0.66 -0.2
43,719 + Shewana3_0036 0.66 -0.4
43,719 + Shewana3_0036 0.66 -0.3
43,719 + Shewana3_0036 0.66 -0.2
43,719 + Shewana3_0036 0.66 +0.6
43,722 + Shewana3_0036 0.66 +0.3
43,727 - Shewana3_0036 0.67 -0.1
43,727 - Shewana3_0036 0.67 -0.2
43,727 - Shewana3_0036 0.67 -0.6
43,727 - Shewana3_0036 0.67 -0.0
43,727 - Shewana3_0036 0.67 -0.2
43,727 - Shewana3_0036 0.67 +0.1
43,727 - Shewana3_0036 0.67 -0.2
43,727 - Shewana3_0036 0.67 +0.0
43,727 - Shewana3_0036 0.67 -0.3
43,727 - Shewana3_0036 0.67 +2.0
43,809 + Shewana3_0036 0.74 +0.0
43,817 - Shewana3_0036 0.75 -0.9
43,884 + Shewana3_0036 0.81 -0.1
43,884 + Shewana3_0036 0.81 +0.3
43,892 - Shewana3_0036 0.81 -1.9
43,892 - Shewana3_0036 0.81 +0.1
43,909 + Shewana3_0036 0.83 -0.5
43,945 - Shewana3_0036 0.86 -0.8
43,981 + Shewana3_0036 0.89 -0.2
44,047 - -0.9
44,078 + -0.1
44,093 - -1.2
44,183 + +0.1
44,187 + -0.2
44,258 - -0.4
44,261 - -0.3
44,319 - Shewana3_0037 0.13 -1.0
44,348 + Shewana3_0037 0.16 +0.1
44,356 - Shewana3_0037 0.17 -0.5
44,410 + Shewana3_0037 0.22 -0.1
44,452 + Shewana3_0037 0.26 -0.2
44,496 + Shewana3_0037 0.31 -0.4
44,504 - Shewana3_0037 0.31 +0.2
44,573 - Shewana3_0037 0.38 -0.3
44,583 - Shewana3_0037 0.39 -0.0
44,614 - Shewana3_0037 0.42 -1.5
44,777 + Shewana3_0037 0.58 -0.2
44,812 + Shewana3_0037 0.62 +0.6
44,919 + Shewana3_0037 0.72 -0.1
44,937 - Shewana3_0037 0.74 -0.9
45,006 - Shewana3_0037 0.81 -0.4
45,182 - -1.0
45,375 + Shewana3_0038 0.36 -0.1
45,490 + Shewana3_0038 0.60 -0.5
45,527 + Shewana3_0038 0.68 +0.3
45,652 + +0.4
45,660 - -1.4
45,660 - -0.4
45,830 - -0.1
45,867 + Shewana3_0039 0.12 -0.6
45,874 + Shewana3_0039 0.13 -0.4
45,982 + Shewana3_0039 0.32 +0.2
46,005 + Shewana3_0039 0.36 +0.1
46,038 + Shewana3_0039 0.42 +0.1
46,106 + Shewana3_0039 0.54 -0.1
46,122 + Shewana3_0039 0.57 -0.1
46,128 + Shewana3_0039 0.58 +0.1
46,130 - Shewana3_0039 0.58 -0.3
46,137 + Shewana3_0039 0.59 -0.5
46,171 - Shewana3_0039 0.65 -0.8

Or see this region's nucleotide sequence