Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0009

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0007 and Shewana3_0008 overlap by 34 nucleotidesShewana3_0008 and dnaA are separated by 603 nucleotidesdnaA and Shewana3_0010 are separated by 20 nucleotides Shewana3_0007: Shewana3_0007 - hypothetical protein (RefSeq), at 8,470 to 8,724 _0007 Shewana3_0008: Shewana3_0008 - ribonuclease P protein component (RefSeq), at 8,691 to 9,047 _0008 Shewana3_0009: dnaA - chromosomal replication initiation protein (RefSeq), at 9,651 to 11,033 dnaA Shewana3_0010: Shewana3_0010 - DNA polymerase III, beta subunit (RefSeq), at 11,054 to 12,154 _0010 Position (kb) 9 10 11 12Strain fitness (log2 ratio) -1 0 1at 9.372 kb on + strandat 9.486 kb on + strandat 9.526 kb on - strandat 9.609 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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9,372 + -0.2
9,486 + +0.7
9,526 - +0.7
9,609 + -0.6

Or see this region's nucleotide sequence