Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4362 and Shewana3_4363 are separated by 49 nucleotides Shewana3_4363 and Shewana3_4364 are separated by 200 nucleotides
Shewana3_4362: Shewana3_4362 - phosphoadenosine phosphosulfate reductase (RefSeq), at 247,614 to 249,209
_4362
Shewana3_4363: Shewana3_4363 - transposase Tn3 family protein (RefSeq), at 249,259 to 252,246
_4363
Shewana3_4364: Shewana3_4364 - manganese and iron superoxide dismutase (RefSeq), at 252,447 to 253,058
_4364
Position (kb) 249
250
251
252
253 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 248.585 kb on - strand, within Shewana3_4362 at 248.617 kb on - strand, within Shewana3_4362 at 248.665 kb on - strand, within Shewana3_4362 at 248.702 kb on + strand, within Shewana3_4362 at 248.741 kb on + strand, within Shewana3_4362 at 248.924 kb on - strand, within Shewana3_4362 at 249.008 kb on - strand, within Shewana3_4362 at 249.057 kb on + strand at 249.178 kb on + strand at 249.310 kb on - strand at 249.409 kb on + strand at 249.439 kb on + strand at 249.577 kb on - strand, within Shewana3_4363 at 249.577 kb on - strand, within Shewana3_4363 at 249.676 kb on - strand, within Shewana3_4363 at 249.756 kb on - strand, within Shewana3_4363 at 249.862 kb on - strand, within Shewana3_4363 at 249.862 kb on - strand, within Shewana3_4363 at 249.900 kb on + strand, within Shewana3_4363 at 250.000 kb on - strand, within Shewana3_4363 at 250.062 kb on - strand, within Shewana3_4363 at 250.084 kb on + strand, within Shewana3_4363 at 250.181 kb on + strand, within Shewana3_4363 at 250.201 kb on - strand, within Shewana3_4363 at 250.339 kb on - strand, within Shewana3_4363 at 250.341 kb on + strand, within Shewana3_4363 at 250.349 kb on - strand, within Shewana3_4363 at 250.650 kb on + strand, within Shewana3_4363 at 250.836 kb on + strand, within Shewana3_4363 at 251.060 kb on + strand, within Shewana3_4363 at 251.142 kb on - strand, within Shewana3_4363 at 251.802 kb on - strand, within Shewana3_4363 at 252.015 kb on - strand at 252.022 kb on - strand at 252.022 kb on - strand at 252.022 kb on - strand at 252.480 kb on - strand at 252.545 kb on + strand, within Shewana3_4364 at 252.604 kb on - strand, within Shewana3_4364 at 252.704 kb on - strand, within Shewana3_4364 at 253.035 kb on - strand at 253.077 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 248,585 - Shewana3_4362 0.61 -1.4 248,617 - Shewana3_4362 0.63 -0.7 248,665 - Shewana3_4362 0.66 -0.9 248,702 + Shewana3_4362 0.68 -3.0 248,741 + Shewana3_4362 0.71 -1.4 248,924 - Shewana3_4362 0.82 -2.9 249,008 - Shewana3_4362 0.87 -0.2 249,057 + -3.0 249,178 + -1.5 249,310 - -0.1 249,409 + -1.7 249,439 + -3.4 249,577 - Shewana3_4363 0.11 -1.1 249,577 - Shewana3_4363 0.11 -0.9 249,676 - Shewana3_4363 0.14 -0.8 249,756 - Shewana3_4363 0.17 -0.0 249,862 - Shewana3_4363 0.20 -0.6 249,862 - Shewana3_4363 0.20 -2.7 249,900 + Shewana3_4363 0.21 -1.1 250,000 - Shewana3_4363 0.25 -0.5 250,062 - Shewana3_4363 0.27 -3.6 250,084 + Shewana3_4363 0.28 -2.8 250,181 + Shewana3_4363 0.31 -0.6 250,201 - Shewana3_4363 0.32 -0.5 250,339 - Shewana3_4363 0.36 -0.2 250,341 + Shewana3_4363 0.36 -1.1 250,349 - Shewana3_4363 0.36 -0.3 250,650 + Shewana3_4363 0.47 -0.1 250,836 + Shewana3_4363 0.53 -0.4 251,060 + Shewana3_4363 0.60 -0.3 251,142 - Shewana3_4363 0.63 -0.5 251,802 - Shewana3_4363 0.85 -0.6 252,015 - -0.6 252,022 - -0.1 252,022 - -1.2 252,022 - +0.2 252,480 - +0.2 252,545 + Shewana3_4364 0.16 -1.0 252,604 - Shewana3_4364 0.26 -0.2 252,704 - Shewana3_4364 0.42 +0.6 253,035 - -0.4 253,077 - -0.2
Or see this region's nucleotide sequence