Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4287 and Shewana3_4288 are separated by 23 nucleotides Shewana3_4288 and Shewana3_4289 are separated by 115 nucleotides Shewana3_4289 and Shewana3_4290 are separated by 14 nucleotides Shewana3_4290 and Shewana3_4291 are separated by 75 nucleotides
Shewana3_4287: Shewana3_4287 - CopA family copper resistance protein (RefSeq), at 170,147 to 172,075
_4287
Shewana3_4288: Shewana3_4288 - copper resistance B precursor (RefSeq), at 172,099 to 172,812
_4288
Shewana3_4289: Shewana3_4289 - copper resistance protein CopC (RefSeq), at 172,928 to 173,350
_4289
Shewana3_4290: Shewana3_4290 - copper resistance D domain-containing protein (RefSeq), at 173,365 to 174,261
_4290
Shewana3_4291: Shewana3_4291 - putative orphan protein (RefSeq), at 174,337 to 174,780
_4291
Position (kb) 172
173
174 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 171.950 kb on + strand at 172.244 kb on + strand, within Shewana3_4288 at 172.252 kb on - strand, within Shewana3_4288 at 172.254 kb on + strand, within Shewana3_4288 at 172.262 kb on - strand, within Shewana3_4288 at 172.274 kb on - strand, within Shewana3_4288 at 172.357 kb on + strand, within Shewana3_4288 at 172.357 kb on + strand, within Shewana3_4288 at 172.515 kb on - strand, within Shewana3_4288 at 172.515 kb on - strand, within Shewana3_4288 at 172.620 kb on + strand, within Shewana3_4288 at 172.652 kb on + strand, within Shewana3_4288 at 172.696 kb on - strand, within Shewana3_4288 at 172.832 kb on + strand at 172.832 kb on + strand at 172.832 kb on + strand at 172.840 kb on - strand at 172.840 kb on - strand at 172.966 kb on + strand at 173.007 kb on + strand, within Shewana3_4289 at 173.007 kb on + strand, within Shewana3_4289 at 173.007 kb on + strand, within Shewana3_4289 at 173.010 kb on - strand, within Shewana3_4289 at 173.015 kb on - strand, within Shewana3_4289 at 173.015 kb on - strand, within Shewana3_4289 at 173.015 kb on - strand, within Shewana3_4289 at 173.060 kb on - strand, within Shewana3_4289 at 173.072 kb on + strand, within Shewana3_4289 at 173.122 kb on - strand, within Shewana3_4289 at 173.191 kb on - strand, within Shewana3_4289 at 173.279 kb on + strand, within Shewana3_4289 at 173.327 kb on + strand at 173.417 kb on + strand at 173.463 kb on + strand, within Shewana3_4290 at 173.570 kb on - strand, within Shewana3_4290 at 173.675 kb on + strand, within Shewana3_4290 at 173.763 kb on + strand, within Shewana3_4290 at 173.833 kb on - strand, within Shewana3_4290 at 173.870 kb on - strand, within Shewana3_4290 at 173.976 kb on + strand, within Shewana3_4290 at 173.995 kb on + strand, within Shewana3_4290 at 174.022 kb on + strand, within Shewana3_4290 at 174.030 kb on - strand, within Shewana3_4290 at 174.064 kb on - strand, within Shewana3_4290 at 174.092 kb on + strand, within Shewana3_4290 at 174.141 kb on + strand, within Shewana3_4290 at 174.208 kb on - strand at 174.331 kb on + strand at 174.344 kb on - strand at 174.346 kb on + strand at 174.346 kb on + strand at 174.346 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 171,950 + -0.7 172,244 + Shewana3_4288 0.20 -0.4 172,252 - Shewana3_4288 0.21 -0.3 172,254 + Shewana3_4288 0.22 -0.0 172,262 - Shewana3_4288 0.23 +0.5 172,274 - Shewana3_4288 0.25 -2.5 172,357 + Shewana3_4288 0.36 -0.7 172,357 + Shewana3_4288 0.36 -0.4 172,515 - Shewana3_4288 0.58 -0.7 172,515 - Shewana3_4288 0.58 -0.2 172,620 + Shewana3_4288 0.73 -0.0 172,652 + Shewana3_4288 0.77 -0.0 172,696 - Shewana3_4288 0.84 -0.7 172,832 + -0.6 172,832 + +0.1 172,832 + +0.4 172,840 - -2.3 172,840 - +0.5 172,966 + -1.2 173,007 + Shewana3_4289 0.19 -0.5 173,007 + Shewana3_4289 0.19 -1.2 173,007 + Shewana3_4289 0.19 -0.6 173,010 - Shewana3_4289 0.19 -0.0 173,015 - Shewana3_4289 0.21 -1.5 173,015 - Shewana3_4289 0.21 -2.0 173,015 - Shewana3_4289 0.21 -2.6 173,060 - Shewana3_4289 0.31 -1.0 173,072 + Shewana3_4289 0.34 +0.1 173,122 - Shewana3_4289 0.46 -2.3 173,191 - Shewana3_4289 0.62 +0.5 173,279 + Shewana3_4289 0.83 -0.1 173,327 + +0.1 173,417 + -0.6 173,463 + Shewana3_4290 0.11 -0.9 173,570 - Shewana3_4290 0.23 -4.4 173,675 + Shewana3_4290 0.35 -1.0 173,763 + Shewana3_4290 0.44 -0.3 173,833 - Shewana3_4290 0.52 -0.5 173,870 - Shewana3_4290 0.56 -0.5 173,976 + Shewana3_4290 0.68 -0.4 173,995 + Shewana3_4290 0.70 -0.4 174,022 + Shewana3_4290 0.73 -2.6 174,030 - Shewana3_4290 0.74 +0.5 174,064 - Shewana3_4290 0.78 -1.0 174,092 + Shewana3_4290 0.81 +0.7 174,141 + Shewana3_4290 0.87 -1.1 174,208 - +0.5 174,331 + -0.2 174,344 - -1.5 174,346 + +2.2 174,346 + -1.7 174,346 + -0.7
Or see this region's nucleotide sequence