Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4276

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4275 and Shewana3_4276 are separated by 143 nucleotidesShewana3_4276 and Shewana3_4277 are separated by 120 nucleotidesShewana3_4277 and Shewana3_4278 are separated by 75 nucleotides Shewana3_4275: Shewana3_4275 - hypothetical protein (RefSeq), at 156,887 to 157,792 _4275 Shewana3_4276: Shewana3_4276 - site-binding protein, DNA replication region (RefSeq), at 157,936 to 158,808 _4276 Shewana3_4277: Shewana3_4277 - OmpA/MotB domain-containing protein (RefSeq), at 158,929 to 159,672 _4277 Shewana3_4278: Shewana3_4278 - hypothetical protein (RefSeq), at 159,748 to 160,467 _4278 Position (kb) 157 158 159Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 157.103 kb on - strand, within Shewana3_4275at 157.103 kb on - strand, within Shewana3_4275at 157.120 kb on - strand, within Shewana3_4275at 157.129 kb on - strand, within Shewana3_4275at 157.507 kb on - strand, within Shewana3_4275at 157.515 kb on - strand, within Shewana3_4275at 157.601 kb on - strand, within Shewana3_4275at 157.614 kb on - strand, within Shewana3_4275at 157.694 kb on - strand, within Shewana3_4275at 157.694 kb on - strand, within Shewana3_4275at 157.824 kb on - strandat 158.143 kb on - strand, within Shewana3_4276at 158.426 kb on + strand, within Shewana3_4276at 158.445 kb on - strand, within Shewana3_4276at 158.453 kb on - strand, within Shewana3_4276at 158.550 kb on + strand, within Shewana3_4276at 158.550 kb on + strand, within Shewana3_4276at 158.550 kb on + strand, within Shewana3_4276at 158.558 kb on - strand, within Shewana3_4276at 158.558 kb on - strand, within Shewana3_4276at 158.558 kb on - strand, within Shewana3_4276at 158.618 kb on - strand, within Shewana3_4276at 158.620 kb on - strand, within Shewana3_4276at 158.806 kb on - strandat 159.088 kb on + strand, within Shewana3_4277at 159.088 kb on + strand, within Shewana3_4277at 159.096 kb on + strand, within Shewana3_4277at 159.391 kb on - strand, within Shewana3_4277at 159.449 kb on + strand, within Shewana3_4277at 159.526 kb on - strand, within Shewana3_4277at 159.612 kb on + strandat 159.635 kb on + strandat 159.663 kb on + strandat 159.671 kb on - strandat 159.671 kb on - strandat 159.765 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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157,103 - Shewana3_4275 0.24 -0.9
157,103 - Shewana3_4275 0.24 -1.6
157,120 - Shewana3_4275 0.26 -1.8
157,129 - Shewana3_4275 0.27 -1.5
157,507 - Shewana3_4275 0.68 -1.6
157,515 - Shewana3_4275 0.69 -0.5
157,601 - Shewana3_4275 0.79 -2.2
157,614 - Shewana3_4275 0.80 -0.9
157,694 - Shewana3_4275 0.89 -0.9
157,694 - Shewana3_4275 0.89 +1.1
157,824 - -0.7
158,143 - Shewana3_4276 0.24 -2.0
158,426 + Shewana3_4276 0.56 -3.6
158,445 - Shewana3_4276 0.58 -2.6
158,453 - Shewana3_4276 0.59 -2.5
158,550 + Shewana3_4276 0.70 -1.0
158,550 + Shewana3_4276 0.70 -1.0
158,550 + Shewana3_4276 0.70 -4.5
158,558 - Shewana3_4276 0.71 +0.5
158,558 - Shewana3_4276 0.71 -0.8
158,558 - Shewana3_4276 0.71 -2.0
158,618 - Shewana3_4276 0.78 +0.5
158,620 - Shewana3_4276 0.78 -2.2
158,806 - -2.0
159,088 + Shewana3_4277 0.21 +0.1
159,088 + Shewana3_4277 0.21 +0.5
159,096 + Shewana3_4277 0.22 -0.5
159,391 - Shewana3_4277 0.62 -1.0
159,449 + Shewana3_4277 0.70 -0.3
159,526 - Shewana3_4277 0.80 -0.4
159,612 + +0.1
159,635 + -0.3
159,663 + +0.5
159,671 - +0.1
159,671 - -2.0
159,765 + -1.8

Or see this region's nucleotide sequence