Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4230 and Shewana3_4231 are separated by 203 nucleotides Shewana3_4231 and Shewana3_4232 are separated by 131 nucleotides Shewana3_4232 and Shewana3_4233 are separated by 78 nucleotides
Shewana3_4230: Shewana3_4230 - hypothetical protein (RefSeq), at 103,994 to 105,601
_4230
Shewana3_4231: Shewana3_4231 - hypothetical protein (RefSeq), at 105,805 to 106,092
_4231
Shewana3_4232: Shewana3_4232 - hypothetical protein (RefSeq), at 106,224 to 106,649
_4232
Shewana3_4233: Shewana3_4233 - hypothetical protein (RefSeq), at 106,728 to 106,979
_4233
Position (kb)
106
107 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 105.623 kb on - strand at 105.628 kb on - strand at 105.691 kb on + strand at 105.708 kb on + strand at 105.795 kb on + strand at 105.802 kb on + strand at 105.808 kb on - strand at 105.888 kb on + strand, within Shewana3_4231 at 105.924 kb on + strand, within Shewana3_4231 at 106.291 kb on + strand, within Shewana3_4232 at 106.299 kb on - strand, within Shewana3_4232 at 106.351 kb on - strand, within Shewana3_4232 at 106.704 kb on + strand at 106.712 kb on - strand at 106.822 kb on + strand, within Shewana3_4233 at 106.929 kb on - strand, within Shewana3_4233 at 107.088 kb on + strand at 107.096 kb on - strand at 107.178 kb on - strand at 107.218 kb on - strand at 107.421 kb on - strand at 107.508 kb on + strand at 107.513 kb on + strand at 107.646 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 105,623 - -1.0 105,628 - +0.2 105,691 + -0.3 105,708 + -0.4 105,795 + -0.1 105,802 + +0.3 105,808 - +0.3 105,888 + Shewana3_4231 0.29 -0.2 105,924 + Shewana3_4231 0.41 -0.4 106,291 + Shewana3_4232 0.16 -1.2 106,299 - Shewana3_4232 0.18 -1.9 106,351 - Shewana3_4232 0.30 -1.9 106,704 + -4.7 106,712 - -2.4 106,822 + Shewana3_4233 0.37 +0.5 106,929 - Shewana3_4233 0.80 -1.0 107,088 + -1.8 107,096 - -0.1 107,178 - +0.2 107,218 - +0.2 107,421 - -0.2 107,508 + -1.7 107,513 + -2.6 107,646 + -2.6
Or see this region's nucleotide sequence