Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4220 and Shewana3_4221 are separated by 278 nucleotides Shewana3_4221 and Shewana3_4222 are separated by 14 nucleotides Shewana3_4222 and Shewana3_4223 are separated by 259 nucleotides
Shewana3_4220: Shewana3_4220 - hypothetical protein (RefSeq), at 92,450 to 93,277
_4220
Shewana3_4221: Shewana3_4221 - hypothetical protein (RefSeq), at 93,556 to 94,818
_4221
Shewana3_4222: Shewana3_4222 - hypothetical protein (RefSeq), at 94,833 to 95,180
_4222
Shewana3_4223: Shewana3_4223 - hypothetical protein (RefSeq), at 95,440 to 96,366
_4223
Position (kb) 93
94
95 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 92.571 kb on - strand, within Shewana3_4220 at 92.605 kb on - strand, within Shewana3_4220 at 92.789 kb on - strand, within Shewana3_4220 at 92.872 kb on - strand, within Shewana3_4220 at 92.887 kb on - strand, within Shewana3_4220 at 92.913 kb on + strand, within Shewana3_4220 at 93.003 kb on - strand, within Shewana3_4220 at 93.147 kb on + strand, within Shewana3_4220 at 93.506 kb on - strand at 93.640 kb on - strand at 93.661 kb on + strand at 93.664 kb on - strand at 93.928 kb on + strand, within Shewana3_4221 at 94.157 kb on - strand, within Shewana3_4221 at 94.173 kb on + strand, within Shewana3_4221 at 94.203 kb on - strand, within Shewana3_4221 at 94.492 kb on - strand, within Shewana3_4221 at 94.492 kb on - strand, within Shewana3_4221 at 94.769 kb on - strand at 94.852 kb on - strand at 95.025 kb on - strand, within Shewana3_4222 at 95.581 kb on + strand, within Shewana3_4223 at 95.705 kb on + strand, within Shewana3_4223
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 92,571 - Shewana3_4220 0.15 +0.4 92,605 - Shewana3_4220 0.19 -0.0 92,789 - Shewana3_4220 0.41 +0.1 92,872 - Shewana3_4220 0.51 +0.4 92,887 - Shewana3_4220 0.53 -0.4 92,913 + Shewana3_4220 0.56 -2.3 93,003 - Shewana3_4220 0.67 -0.0 93,147 + Shewana3_4220 0.84 -2.5 93,506 - +0.2 93,640 - -0.2 93,661 + -1.8 93,664 - -0.2 93,928 + Shewana3_4221 0.29 -2.0 94,157 - Shewana3_4221 0.48 +0.7 94,173 + Shewana3_4221 0.49 -1.9 94,203 - Shewana3_4221 0.51 -0.7 94,492 - Shewana3_4221 0.74 -0.2 94,492 - Shewana3_4221 0.74 -1.2 94,769 - -1.3 94,852 - -2.5 95,025 - Shewana3_4222 0.55 -3.0 95,581 + Shewana3_4223 0.15 -0.8 95,705 + Shewana3_4223 0.29 -1.9
Or see this region's nucleotide sequence