Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4209 and Shewana3_4210 are separated by 74 nucleotides Shewana3_4210 and Shewana3_4211 are separated by 141 nucleotides Shewana3_4211 and Shewana3_4212 overlap by 4 nucleotides Shewana3_4212 and Shewana3_4213 are separated by 135 nucleotides
Shewana3_4209: Shewana3_4209 - Type IV secretory pathway protease TraF-like protein (RefSeq), at 78,004 to 78,510
_4209
Shewana3_4210: Shewana3_4210 - hypothetical protein (RefSeq), at 78,585 to 79,010
_4210
Shewana3_4211: Shewana3_4211 - hypothetical protein (RefSeq), at 79,152 to 79,604
_4211
Shewana3_4212: Shewana3_4212 - hypothetical protein (RefSeq), at 79,601 to 80,062
_4212
Shewana3_4213: Shewana3_4213 - hypothetical protein (RefSeq), at 80,198 to 84,442
_4213
Position (kb) 79
80 Strain fitness (log2 ratio) -1
0
1 at 78.210 kb on + strand, within Shewana3_4209 at 78.210 kb on + strand, within Shewana3_4209 at 78.218 kb on - strand, within Shewana3_4209 at 78.316 kb on - strand, within Shewana3_4209 at 78.491 kb on + strand at 78.774 kb on + strand, within Shewana3_4210 at 78.900 kb on - strand, within Shewana3_4210 at 78.900 kb on - strand, within Shewana3_4210 at 79.020 kb on - strand at 79.055 kb on - strand at 79.282 kb on - strand, within Shewana3_4211 at 79.499 kb on - strand, within Shewana3_4211 at 79.499 kb on - strand, within Shewana3_4211 at 79.499 kb on - strand, within Shewana3_4211 at 79.612 kb on - strand at 79.614 kb on - strand at 80.251 kb on - strand at 80.379 kb on - strand at 80.381 kb on + strand at 80.476 kb on + strand at 80.519 kb on + strand at 80.527 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 78,210 + Shewana3_4209 0.41 +0.5 78,210 + Shewana3_4209 0.41 -0.9 78,218 - Shewana3_4209 0.42 -0.0 78,316 - Shewana3_4209 0.62 -0.0 78,491 + -1.0 78,774 + Shewana3_4210 0.44 -0.1 78,900 - Shewana3_4210 0.74 -1.7 78,900 - Shewana3_4210 0.74 +1.1 79,020 - -0.5 79,055 - -1.0 79,282 - Shewana3_4211 0.29 +0.5 79,499 - Shewana3_4211 0.77 +0.6 79,499 - Shewana3_4211 0.77 +0.9 79,499 - Shewana3_4211 0.77 +0.7 79,612 - +0.7 79,614 - +0.4 80,251 - +0.4 80,379 - -0.0 80,381 + -0.3 80,476 + -0.4 80,519 + -0.9 80,527 - -0.1
Or see this region's nucleotide sequence