Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4201 and Shewana3_4202 are separated by 96 nucleotides Shewana3_4202 and Shewana3_4203 are separated by 178 nucleotides
Shewana3_4201: Shewana3_4201 - ATPase (RefSeq), at 63,987 to 64,961
_4201
Shewana3_4202: Shewana3_4202 - hypothetical protein (RefSeq), at 65,058 to 66,125
_4202
Shewana3_4203: Shewana3_4203 - hypothetical protein (RefSeq), at 66,304 to 66,699
_4203
Position (kb) 65
66
67 Strain fitness (log2 ratio) -2
-1
0
1 at 64.073 kb on - strand at 64.281 kb on - strand, within Shewana3_4201 at 64.543 kb on - strand, within Shewana3_4201 at 64.591 kb on + strand, within Shewana3_4201 at 64.599 kb on - strand, within Shewana3_4201 at 64.690 kb on - strand, within Shewana3_4201 at 64.700 kb on - strand, within Shewana3_4201 at 64.839 kb on + strand, within Shewana3_4201 at 65.173 kb on - strand, within Shewana3_4202 at 65.187 kb on + strand, within Shewana3_4202 at 65.401 kb on - strand, within Shewana3_4202 at 65.424 kb on - strand, within Shewana3_4202 at 65.573 kb on + strand, within Shewana3_4202 at 65.642 kb on - strand, within Shewana3_4202 at 65.643 kb on + strand, within Shewana3_4202 at 65.705 kb on + strand, within Shewana3_4202 at 65.713 kb on - strand, within Shewana3_4202 at 65.825 kb on - strand, within Shewana3_4202 at 65.968 kb on - strand, within Shewana3_4202 at 66.140 kb on - strand at 66.234 kb on + strand at 66.332 kb on + strand at 66.508 kb on - strand, within Shewana3_4203 at 66.517 kb on - strand, within Shewana3_4203 at 66.703 kb on - strand at 66.731 kb on + strand at 66.731 kb on + strand at 66.739 kb on - strand at 66.784 kb on - strand at 66.815 kb on - strand at 66.903 kb on + strand at 67.102 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 64,073 - +0.5 64,281 - Shewana3_4201 0.30 +0.7 64,543 - Shewana3_4201 0.57 +0.1 64,591 + Shewana3_4201 0.62 -1.0 64,599 - Shewana3_4201 0.63 -0.2 64,690 - Shewana3_4201 0.72 +0.1 64,700 - Shewana3_4201 0.73 -0.4 64,839 + Shewana3_4201 0.87 -2.3 65,173 - Shewana3_4202 0.11 +0.2 65,187 + Shewana3_4202 0.12 +0.0 65,401 - Shewana3_4202 0.32 +0.0 65,424 - Shewana3_4202 0.34 +0.4 65,573 + Shewana3_4202 0.48 -0.6 65,642 - Shewana3_4202 0.55 -0.2 65,643 + Shewana3_4202 0.55 -1.8 65,705 + Shewana3_4202 0.61 -0.9 65,713 - Shewana3_4202 0.61 +0.2 65,825 - Shewana3_4202 0.72 -0.2 65,968 - Shewana3_4202 0.85 +1.0 66,140 - -2.3 66,234 + -0.6 66,332 + -0.5 66,508 - Shewana3_4203 0.52 +0.2 66,517 - Shewana3_4203 0.54 +0.2 66,703 - +0.4 66,731 + -0.4 66,731 + -0.2 66,739 - -0.1 66,784 - +0.3 66,815 - +0.1 66,903 + -0.2 67,102 + -0.8
Or see this region's nucleotide sequence