Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4197

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4195 and Shewana3_4196 are separated by 121 nucleotidesShewana3_4196 and Shewana3_4197 are separated by 111 nucleotidesShewana3_4197 and Shewana3_4198 are separated by 506 nucleotides Shewana3_4195: Shewana3_4195 - hypothetical protein (RefSeq), at 58,048 to 58,335 _4195 Shewana3_4196: Shewana3_4196 - hypothetical protein (RefSeq), at 58,457 to 58,891 _4196 Shewana3_4197: Shewana3_4197 - putative toxin of addiction system (RefSeq), at 59,003 to 59,368 _4197 Shewana3_4198: Shewana3_4198 - hypothetical protein (RefSeq), at 59,875 to 60,306 _4198 Position (kb) 59 60Strain fitness (log2 ratio) -2 -1 0 1at 58.080 kb on - strand, within Shewana3_4195at 58.201 kb on - strand, within Shewana3_4195at 58.219 kb on + strand, within Shewana3_4195at 58.292 kb on - strand, within Shewana3_4195at 58.343 kb on + strandat 58.353 kb on + strandat 58.353 kb on + strandat 58.360 kb on + strandat 58.370 kb on + strandat 58.378 kb on - strandat 58.381 kb on + strandat 58.427 kb on - strandat 58.434 kb on + strandat 58.454 kb on + strandat 58.547 kb on - strand, within Shewana3_4196at 58.564 kb on + strand, within Shewana3_4196at 58.572 kb on - strand, within Shewana3_4196at 58.582 kb on - strand, within Shewana3_4196at 58.586 kb on - strand, within Shewana3_4196at 58.633 kb on + strand, within Shewana3_4196at 58.687 kb on - strand, within Shewana3_4196at 59.209 kb on + strand, within Shewana3_4197at 59.366 kb on - strandat 59.515 kb on - strandat 59.524 kb on - strandat 59.645 kb on + strandat 59.754 kb on - strandat 59.762 kb on + strandat 59.856 kb on + strandat 59.859 kb on - strandat 59.859 kb on - strandat 60.007 kb on - strand, within Shewana3_4198at 60.047 kb on - strand, within Shewana3_4198at 60.060 kb on + strand, within Shewana3_4198at 60.140 kb on - strand, within Shewana3_4198at 60.330 kb on + strandat 60.353 kb on + strandat 60.355 kb on + strandat 60.362 kb on + strandat 60.363 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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58,080 - Shewana3_4195 0.11 -0.2
58,201 - Shewana3_4195 0.53 -0.2
58,219 + Shewana3_4195 0.59 -0.9
58,292 - Shewana3_4195 0.85 -2.4
58,343 + -0.0
58,353 + -0.5
58,353 + -0.1
58,360 + +0.1
58,370 + -0.1
58,378 - -0.3
58,381 + -0.3
58,427 - -0.2
58,434 + -1.1
58,454 + +0.5
58,547 - Shewana3_4196 0.21 -0.2
58,564 + Shewana3_4196 0.25 -0.8
58,572 - Shewana3_4196 0.26 -0.3
58,582 - Shewana3_4196 0.29 -0.2
58,586 - Shewana3_4196 0.30 -0.4
58,633 + Shewana3_4196 0.40 -0.8
58,687 - Shewana3_4196 0.53 -0.1
59,209 + Shewana3_4197 0.56 -2.1
59,366 - +0.0
59,515 - -0.1
59,524 - -2.2
59,645 + -0.8
59,754 - -0.1
59,762 + -0.2
59,856 + -0.7
59,859 - +0.7
59,859 - +0.1
60,007 - Shewana3_4198 0.31 +0.5
60,047 - Shewana3_4198 0.40 +0.4
60,060 + Shewana3_4198 0.43 -0.0
60,140 - Shewana3_4198 0.61 +0.2
60,330 + +0.2
60,353 + -0.6
60,355 + -0.4
60,362 + -0.4
60,363 - -0.2

Or see this region's nucleotide sequence