Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4192

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4190 and Shewana3_4191 are separated by 71 nucleotidesShewana3_4191 and Shewana3_4192 are separated by 511 nucleotidesShewana3_4192 and Shewana3_4193 are separated by 130 nucleotidesShewana3_4193 and Shewana3_4194 are separated by 93 nucleotides Shewana3_4190: Shewana3_4190 - hypothetical protein (RefSeq), at 54,097 to 54,537 _4190 Shewana3_4191: Shewana3_4191 - ferredoxin (RefSeq), at 54,609 to 54,833 _4191 Shewana3_4192: Shewana3_4192 - hypothetical protein (RefSeq), at 55,345 to 55,773 _4192 Shewana3_4193: Shewana3_4193 - hypothetical protein (RefSeq), at 55,904 to 56,452 _4193 Shewana3_4194: Shewana3_4194 - C-5 cytosine-specific DNA methylase (RefSeq), at 56,546 to 57,919 _4194 Position (kb) 55 56Strain fitness (log2 ratio) -3 -2 -1 0 1at 54.483 kb on + strand, within Shewana3_4190at 54.483 kb on + strand, within Shewana3_4190at 54.483 kb on + strand, within Shewana3_4190at 54.546 kb on + strandat 54.547 kb on - strandat 54.598 kb on - strandat 54.663 kb on - strand, within Shewana3_4191at 54.682 kb on + strand, within Shewana3_4191at 54.714 kb on - strand, within Shewana3_4191at 54.724 kb on - strand, within Shewana3_4191at 54.842 kb on - strandat 54.872 kb on + strandat 54.938 kb on - strandat 55.342 kb on - strandat 55.381 kb on + strandat 55.404 kb on + strand, within Shewana3_4192at 55.412 kb on - strand, within Shewana3_4192at 55.851 kb on - strandat 56.032 kb on + strand, within Shewana3_4193at 56.175 kb on + strand, within Shewana3_4193at 56.229 kb on - strand, within Shewana3_4193at 56.239 kb on - strand, within Shewana3_4193at 56.270 kb on + strand, within Shewana3_4193at 56.273 kb on - strand, within Shewana3_4193at 56.278 kb on - strand, within Shewana3_4193at 56.358 kb on - strand, within Shewana3_4193at 56.538 kb on - strandat 56.770 kb on + strand, within Shewana3_4194

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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54,483 + Shewana3_4190 0.88 -0.2
54,483 + Shewana3_4190 0.88 +0.6
54,483 + Shewana3_4190 0.88 -0.0
54,546 + +0.0
54,547 - -0.8
54,598 - +0.6
54,663 - Shewana3_4191 0.24 +0.3
54,682 + Shewana3_4191 0.32 -1.1
54,714 - Shewana3_4191 0.47 +0.5
54,724 - Shewana3_4191 0.51 +0.0
54,842 - -0.0
54,872 + -1.4
54,938 - -0.3
55,342 - +0.1
55,381 + -0.8
55,404 + Shewana3_4192 0.14 -3.7
55,412 - Shewana3_4192 0.16 -1.1
55,851 - -0.8
56,032 + Shewana3_4193 0.23 -1.0
56,175 + Shewana3_4193 0.49 -0.3
56,229 - Shewana3_4193 0.59 +0.1
56,239 - Shewana3_4193 0.61 -0.8
56,270 + Shewana3_4193 0.67 -0.7
56,273 - Shewana3_4193 0.67 +0.2
56,278 - Shewana3_4193 0.68 +0.3
56,358 - Shewana3_4193 0.83 +0.3
56,538 - -0.1
56,770 + Shewana3_4194 0.16 -0.7

Or see this region's nucleotide sequence