Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4190 and Shewana3_4191 are separated by 71 nucleotides Shewana3_4191 and Shewana3_4192 are separated by 511 nucleotides Shewana3_4192 and Shewana3_4193 are separated by 130 nucleotides Shewana3_4193 and Shewana3_4194 are separated by 93 nucleotides
Shewana3_4190: Shewana3_4190 - hypothetical protein (RefSeq), at 54,097 to 54,537
_4190
Shewana3_4191: Shewana3_4191 - ferredoxin (RefSeq), at 54,609 to 54,833
_4191
Shewana3_4192: Shewana3_4192 - hypothetical protein (RefSeq), at 55,345 to 55,773
_4192
Shewana3_4193: Shewana3_4193 - hypothetical protein (RefSeq), at 55,904 to 56,452
_4193
Shewana3_4194: Shewana3_4194 - C-5 cytosine-specific DNA methylase (RefSeq), at 56,546 to 57,919
_4194
Position (kb) 55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 54.483 kb on + strand, within Shewana3_4190 at 54.483 kb on + strand, within Shewana3_4190 at 54.483 kb on + strand, within Shewana3_4190 at 54.546 kb on + strand at 54.547 kb on - strand at 54.598 kb on - strand at 54.663 kb on - strand, within Shewana3_4191 at 54.682 kb on + strand, within Shewana3_4191 at 54.714 kb on - strand, within Shewana3_4191 at 54.724 kb on - strand, within Shewana3_4191 at 54.842 kb on - strand at 54.872 kb on + strand at 54.938 kb on - strand at 55.342 kb on - strand at 55.381 kb on + strand at 55.404 kb on + strand, within Shewana3_4192 at 55.412 kb on - strand, within Shewana3_4192 at 55.851 kb on - strand at 56.032 kb on + strand, within Shewana3_4193 at 56.175 kb on + strand, within Shewana3_4193 at 56.229 kb on - strand, within Shewana3_4193 at 56.239 kb on - strand, within Shewana3_4193 at 56.270 kb on + strand, within Shewana3_4193 at 56.273 kb on - strand, within Shewana3_4193 at 56.278 kb on - strand, within Shewana3_4193 at 56.358 kb on - strand, within Shewana3_4193 at 56.538 kb on - strand at 56.770 kb on + strand, within Shewana3_4194
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 54,483 + Shewana3_4190 0.88 -0.2 54,483 + Shewana3_4190 0.88 +0.6 54,483 + Shewana3_4190 0.88 -0.0 54,546 + +0.0 54,547 - -0.8 54,598 - +0.6 54,663 - Shewana3_4191 0.24 +0.3 54,682 + Shewana3_4191 0.32 -1.1 54,714 - Shewana3_4191 0.47 +0.5 54,724 - Shewana3_4191 0.51 +0.0 54,842 - -0.0 54,872 + -1.4 54,938 - -0.3 55,342 - +0.1 55,381 + -0.8 55,404 + Shewana3_4192 0.14 -3.7 55,412 - Shewana3_4192 0.16 -1.1 55,851 - -0.8 56,032 + Shewana3_4193 0.23 -1.0 56,175 + Shewana3_4193 0.49 -0.3 56,229 - Shewana3_4193 0.59 +0.1 56,239 - Shewana3_4193 0.61 -0.8 56,270 + Shewana3_4193 0.67 -0.7 56,273 - Shewana3_4193 0.67 +0.2 56,278 - Shewana3_4193 0.68 +0.3 56,358 - Shewana3_4193 0.83 +0.3 56,538 - -0.1 56,770 + Shewana3_4194 0.16 -0.7
Or see this region's nucleotide sequence