Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4157 and Shewana3_4158 are separated by 77 nucleotides Shewana3_4158 and Shewana3_4159 are separated by 336 nucleotides Shewana3_4159 and Shewana3_4160 are separated by 627 nucleotides
Shewana3_4157: Shewana3_4157 - Co/Zn/Cd efflux system component (RefSeq), at 19,416 to 20,315
_4157
Shewana3_4158: Shewana3_4158 - MerR family transcriptional regulator (RefSeq), at 20,393 to 20,800
_4158
Shewana3_4159: Shewana3_4159 - putative transposase (RefSeq), at 21,137 to 21,307
_4159
Shewana3_4160: Shewana3_4160 - S-adenosylhomocysteine hydrolase (RefSeq), at 21,935 to 22,345
_4160
Position (kb) 21
22 Strain fitness (log2 ratio) -1
0
1 at 20.154 kb on + strand, within Shewana3_4157 at 20.157 kb on - strand, within Shewana3_4157 at 20.162 kb on - strand, within Shewana3_4157 at 20.162 kb on - strand, within Shewana3_4157 at 20.322 kb on + strand at 20.330 kb on - strand at 20.470 kb on + strand, within Shewana3_4158 at 20.470 kb on + strand, within Shewana3_4158 at 20.472 kb on + strand, within Shewana3_4158 at 20.478 kb on - strand, within Shewana3_4158 at 20.760 kb on - strand at 20.783 kb on - strand at 21.097 kb on - strand at 21.182 kb on + strand, within Shewana3_4159 at 21.356 kb on - strand at 21.377 kb on - strand at 21.458 kb on - strand at 21.537 kb on + strand at 21.633 kb on + strand at 21.650 kb on + strand at 21.716 kb on - strand at 21.716 kb on - strand at 21.895 kb on - strand at 21.901 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 20,154 + Shewana3_4157 0.82 -0.4 20,157 - Shewana3_4157 0.82 -0.5 20,162 - Shewana3_4157 0.83 -0.5 20,162 - Shewana3_4157 0.83 -0.4 20,322 + -0.9 20,330 - -0.2 20,470 + Shewana3_4158 0.19 +0.5 20,470 + Shewana3_4158 0.19 +0.2 20,472 + Shewana3_4158 0.19 -0.0 20,478 - Shewana3_4158 0.21 -0.2 20,760 - -0.5 20,783 - +0.0 21,097 - -0.3 21,182 + Shewana3_4159 0.26 +0.5 21,356 - +0.5 21,377 - +0.0 21,458 - -0.1 21,537 + +0.0 21,633 + -0.7 21,650 + -0.9 21,716 - +0.3 21,716 - -1.3 21,895 - -1.2 21,901 - +0.1
Or see this region's nucleotide sequence