Strain Fitness in Shewanella loihica PV-4 around Shew_0926

Experiment: nitrate 2000 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 2000 mM
1,054,198	+		Shew_0925	0.39	-0.0
1,054,220	+		Shew_0925	0.41	-0.3
1,054,220	+		Shew_0925	0.41	+0.6
1,054,242	+		Shew_0925	0.42	-0.3
1,054,279	-		Shew_0925	0.45	-0.1
1,054,279	-		Shew_0925	0.45	+0.7
1,054,283	+		Shew_0925	0.45	+0.3
1,054,283	+		Shew_0925	0.45	+0.0
1,054,291	-		Shew_0925	0.46	+0.4
1,054,291	-		Shew_0925	0.46	-0.3
1,054,297	+		Shew_0925	0.46	+0.1
1,054,308	+		Shew_0925	0.47	+0.8
1,054,395	+		Shew_0925	0.53	+0.8
1,054,405	+		Shew_0925	0.54	+0.8
1,054,405	+		Shew_0925	0.54	+0.6
1,054,405	+		Shew_0925	0.54	+0.3
1,054,413	-		Shew_0925	0.54	+0.4
1,054,413	-		Shew_0925	0.54	+0.4
1,054,413	-		Shew_0925	0.54	+0.1
1,054,457	-		Shew_0925	0.57	+0.0
1,054,461	+		Shew_0925	0.57	+0.2
1,054,485	+		Shew_0925	0.59	+0.4
1,054,485	+		Shew_0925	0.59	+0.1
1,054,485	+		Shew_0925	0.59	+1.1
1,054,493	-		Shew_0925	0.60	-0.3
1,054,493	-		Shew_0925	0.60	-0.2
1,054,554	+		Shew_0925	0.64	+0.1
1,054,577	+		Shew_0925	0.65	+0.7
1,054,577	+		Shew_0925	0.65	-0.1
1,054,577	+		Shew_0925	0.65	+0.6
1,054,586	+		Shew_0925	0.66	+0.2
1,054,587	+		Shew_0925	0.66	-0.0
1,054,587	+		Shew_0925	0.66	+1.2
1,054,587	+		Shew_0925	0.66	+0.0
1,054,587	+		Shew_0925	0.66	+0.3
1,054,587	+		Shew_0925	0.66	+0.4
1,054,594	-		Shew_0925	0.66	+0.1
1,054,594	-		Shew_0925	0.66	-0.2
1,054,594	-		Shew_0925	0.66	-0.0
1,054,595	-		Shew_0925	0.67	+0.6
1,054,595	-		Shew_0925	0.67	-0.5
1,054,595	-		Shew_0925	0.67	-0.1
1,054,595	-		Shew_0925	0.67	+0.1
1,054,595	-		Shew_0925	0.67	+0.3
1,054,595	-		Shew_0925	0.67	+0.4
1,054,595	-		Shew_0925	0.67	+0.1
1,054,595	-		Shew_0925	0.67	+0.5
1,054,595	-		Shew_0925	0.67	+0.4
1,054,595	-		Shew_0925	0.67	+0.2
1,054,595	-		Shew_0925	0.67	+0.3
1,054,596	+		Shew_0925	0.67	+1.4
1,054,596	+		Shew_0925	0.67	-0.2
1,054,596	+		Shew_0925	0.67	+0.9
1,054,600	+		Shew_0925	0.67	+0.3
1,054,601	+		Shew_0925	0.67	+0.2
1,054,601	+		Shew_0925	0.67	+0.6
1,054,601	+		Shew_0925	0.67	+1.4
1,054,601	+		Shew_0925	0.67	+0.8
1,054,601	+		Shew_0925	0.67	-0.1
1,054,601	+		Shew_0925	0.67	+1.7
1,054,601	+		Shew_0925	0.67	-0.7
1,054,604	-		Shew_0925	0.67	-0.8
1,054,604	-		Shew_0925	0.67	-0.0
1,054,604	-		Shew_0925	0.67	+1.0
1,054,609	+		Shew_0925	0.67	-1.8
1,054,609	-		Shew_0925	0.67	-0.6
1,054,609	+		Shew_0925	0.67	-0.0
1,054,609	-		Shew_0925	0.67	+1.4
1,054,609	-		Shew_0925	0.67	+0.6
1,054,609	-		Shew_0925	0.67	-0.2
1,054,617	-		Shew_0925	0.68	-0.1
1,054,617	-		Shew_0925	0.68	-0.0
1,054,617	-		Shew_0925	0.68	+0.1
1,054,617	-		Shew_0925	0.68	+0.0
1,054,646	-		Shew_0925	0.70	+0.2
1,054,672	+		Shew_0925	0.72	+0.4
1,054,702	+		Shew_0925	0.74	+0.2
1,054,702	+		Shew_0925	0.74	-0.2
1,054,710	+		Shew_0925	0.74	+0.4
1,054,727	+		Shew_0925	0.76	-0.2
1,054,727	+		Shew_0925	0.76	-0.6
1,054,727	+		Shew_0925	0.76	+1.4
1,054,727	+		Shew_0925	0.76	+0.3
1,054,727	+		Shew_0925	0.76	-0.1
1,054,727	+		Shew_0925	0.76	-0.1
1,054,727	+		Shew_0925	0.76	+0.2
1,054,727	+		Shew_0925	0.76	+1.0
1,054,727	+		Shew_0925	0.76	-0.1
1,054,727	+		Shew_0925	0.76	+0.0
1,054,727	+		Shew_0925	0.76	-0.4
1,054,735	-		Shew_0925	0.76	+0.5
1,054,735	-		Shew_0925	0.76	-0.7
1,054,735	-		Shew_0925	0.76	+0.1
1,054,735	-		Shew_0925	0.76	+0.8
1,054,735	-		Shew_0925	0.76	-0.2
1,054,735	-		Shew_0925	0.76	-0.0
1,054,763	+		Shew_0925	0.78	+0.1
1,054,771	+		Shew_0925	0.79	+0.4
1,054,773	-		Shew_0925	0.79	+0.2
1,054,773	-		Shew_0925	0.79	-1.0
1,054,784	+		Shew_0925	0.79	-0.1
1,054,802	-		Shew_0925	0.81	+0.7
1,054,874	+		Shew_0925	0.86	+0.7
1,054,885	+		Shew_0925	0.86	-0.4
1,054,893	-		Shew_0925	0.87	-1.3
1,054,893	-		Shew_0925	0.87	+0.1
1,054,893	-		Shew_0925	0.87	-0.5
1,054,893	-		Shew_0925	0.87	-0.7
1,054,910	+		Shew_0925	0.88	+0.4
1,054,910	+		Shew_0925	0.88	+0.1
1,054,910	+		Shew_0925	0.88	-1.4
1,054,910	+		Shew_0925	0.88	-0.9
1,054,910	+		Shew_0925	0.88	+0.5
1,054,912	+		Shew_0925	0.88	-0.4
1,054,918	-		Shew_0925	0.89	+0.3
1,054,918	-		Shew_0925	0.89	-0.0
1,054,918	-		Shew_0925	0.89	+0.6
1,054,918	-		Shew_0925	0.89	-0.0
1,054,918	-		Shew_0925	0.89	+0.1
1,054,918	-		Shew_0925	0.89	+0.4
1,054,918	-		Shew_0925	0.89	-0.6
1,054,918	-		Shew_0925	0.89	-0.1
1,054,918	-		Shew_0925	0.89	+0.2
1,054,926	-		Shew_0925	0.89	+0.3
1,054,927	-		Shew_0925	0.89	+0.5
1,054,941	+				+2.3
1,054,949	-				-0.1
1,054,949	-				-0.4
1,054,974	+				+1.0
1,054,974	-				-0.8
1,055,017	+				-0.4
1,055,017	+				-1.4
1,055,027	+				-2.0
1,055,027	+				+0.1
1,055,035	-				+0.0
1,055,035	-				+1.3
1,055,035	-				+0.2
1,055,035	-				+0.6
1,055,035	-				-0.5
1,055,035	-				-0.1
1,055,035	-				-0.9
1,055,040	-				+0.0
1,055,091	+				-1.1
1,055,091	+				+0.1
1,055,099	-				+0.4
1,055,099	-				+0.3
1,055,126	+				-0.2
1,055,134	-				+0.0
1,055,136	-				+0.0
1,055,140	+				+0.7
1,055,140	+				+0.3
1,055,140	+				-0.1
1,055,140	+				+0.3
1,055,142	-				+0.4
1,055,146	+				-0.1
1,055,148	-				+0.0
1,055,151	+				-0.4
1,055,151	+				-0.0
1,055,151	+				-0.1
1,055,154	-				+0.1
1,055,157	+				-0.2
1,055,201	+				+1.7
1,055,201	+				-0.4
1,055,201	+				-0.5
1,055,201	+				-0.4
1,055,201	+				+3.0
1,055,209	-				+0.1
1,055,211	+				-0.3
1,055,211	+				+0.3
1,055,227	+				-0.3
1,055,227	+				-0.4
1,055,233	+				+0.5
1,055,236	-				+0.1
1,055,236	-				-0.6
1,055,238	+				+2.2
1,055,238	+				+0.0
1,055,238	+				-0.3
1,055,238	+				+0.3
1,055,241	-		Shew_0926	0.10	+0.2
1,055,343	+		Shew_0926	0.26	-0.3
1,055,407	+		Shew_0926	0.35	+0.7
1,055,560	+		Shew_0926	0.59	-0.1
1,055,561	+		Shew_0926	0.59	-0.2
1,055,667	-		Shew_0926	0.75	-0.7
1,056,476	+				+0.6