Experiment: nitrate 2000 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0560 and Shew_0561 are separated by 436 nucleotides Shew_0561 and Shew_0562 are separated by 100 nucleotides Shew_0562 and Shew_0563 overlap by 14 nucleotides
Shew_0560: Shew_0560 - hypothetical protein (RefSeq), at 635,005 to 635,460
_0560
Shew_0561: Shew_0561 - carbohydrate kinase, YjeF-related protein (RefSeq), at 635,897 to 637,375
_0561
Shew_0562: Shew_0562 - hypothetical protein (RefSeq), at 637,476 to 637,949
_0562
Shew_0563: Shew_0563 - N-acetylmuramoyl-L-alanine amidase (RefSeq), at 637,936 to 639,255
_0563
Position (kb) 635
636
637
638 Strain fitness (log2 ratio) -1
0
1 at 635.031 kb on + strand at 635.049 kb on - strand at 635.088 kb on - strand, within Shew_0560 at 635.090 kb on + strand, within Shew_0560 at 635.090 kb on + strand, within Shew_0560 at 635.098 kb on - strand, within Shew_0560 at 635.362 kb on - strand, within Shew_0560 at 635.454 kb on + strand at 635.462 kb on - strand at 635.772 kb on + strand at 635.854 kb on + strand at 635.899 kb on - strand at 636.557 kb on - strand, within Shew_0561 at 636.638 kb on - strand, within Shew_0561 at 636.832 kb on - strand, within Shew_0561 at 636.863 kb on - strand, within Shew_0561 at 636.863 kb on - strand, within Shew_0561 at 636.868 kb on - strand, within Shew_0561 at 637.105 kb on + strand, within Shew_0561 at 637.369 kb on + strand at 637.369 kb on + strand at 637.377 kb on - strand at 637.377 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 2000 mM remove 635,031 + +0.5 635,049 - +0.0 635,088 - Shew_0560 0.18 -0.6 635,090 + Shew_0560 0.19 +0.0 635,090 + Shew_0560 0.19 +0.5 635,098 - Shew_0560 0.20 +1.4 635,362 - Shew_0560 0.78 +0.4 635,454 + -0.2 635,462 - +0.4 635,772 + +0.4 635,854 + +0.4 635,899 - +0.5 636,557 - Shew_0561 0.45 -0.0 636,638 - Shew_0561 0.50 +0.4 636,832 - Shew_0561 0.63 -1.1 636,863 - Shew_0561 0.65 +0.3 636,863 - Shew_0561 0.65 +0.0 636,868 - Shew_0561 0.66 +0.3 637,105 + Shew_0561 0.82 -0.4 637,369 + -0.3 637,369 + +0.6 637,377 - +0.3 637,377 - +0.6
Or see this region's nucleotide sequence