Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_952

Experiment: Aluminum chloride 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_950 and Pf6N2E2_951 overlap by 1 nucleotidesPf6N2E2_951 and Pf6N2E2_952 are separated by 70 nucleotidesPf6N2E2_952 and Pf6N2E2_953 overlap by 11 nucleotidesPf6N2E2_953 and Pf6N2E2_954 are separated by 125 nucleotides Pf6N2E2_950 - Type IV secretory pathway, VirB4 components, at 1,120,572 to 1,123,322 _950 Pf6N2E2_951 - putative lipoprotein, at 1,123,322 to 1,123,630 _951 Pf6N2E2_952 - putative exported protein, at 1,123,701 to 1,125,215 _952 Pf6N2E2_953 - FIG00958851: hypothetical protein, at 1,125,205 to 1,125,888 _953 Pf6N2E2_954 - Possible exported protein, at 1,126,014 to 1,126,634 _954 Position (kb) 1123 1124 1125 1126Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1122.782 kb on - strand, within Pf6N2E2_950at 1122.901 kb on + strand, within Pf6N2E2_950at 1122.901 kb on + strand, within Pf6N2E2_950at 1122.901 kb on + strand, within Pf6N2E2_950at 1122.902 kb on - strand, within Pf6N2E2_950at 1122.902 kb on - strand, within Pf6N2E2_950at 1122.902 kb on - strand, within Pf6N2E2_950at 1122.902 kb on - strand, within Pf6N2E2_950at 1122.902 kb on - strand, within Pf6N2E2_950at 1122.943 kb on + strand, within Pf6N2E2_950at 1122.943 kb on + strand, within Pf6N2E2_950at 1122.943 kb on + strand, within Pf6N2E2_950at 1122.943 kb on + strand, within Pf6N2E2_950at 1122.944 kb on - strand, within Pf6N2E2_950at 1122.964 kb on + strand, within Pf6N2E2_950at 1123.181 kb on - strandat 1123.225 kb on + strandat 1123.225 kb on + strandat 1123.226 kb on - strandat 1123.226 kb on - strandat 1123.226 kb on - strandat 1123.226 kb on - strandat 1123.226 kb on - strandat 1123.323 kb on + strandat 1123.323 kb on + strandat 1123.323 kb on + strandat 1123.324 kb on - strandat 1123.357 kb on - strand, within Pf6N2E2_951at 1123.371 kb on + strand, within Pf6N2E2_951at 1123.372 kb on - strand, within Pf6N2E2_951at 1123.434 kb on + strand, within Pf6N2E2_951at 1123.436 kb on + strand, within Pf6N2E2_951at 1123.436 kb on + strand, within Pf6N2E2_951at 1123.436 kb on + strand, within Pf6N2E2_951at 1123.436 kb on + strand, within Pf6N2E2_951at 1123.436 kb on + strand, within Pf6N2E2_951at 1123.436 kb on + strand, within Pf6N2E2_951at 1123.436 kb on + strand, within Pf6N2E2_951at 1123.436 kb on + strand, within Pf6N2E2_951at 1123.436 kb on + strand, within Pf6N2E2_951at 1123.436 kb on + strand, within Pf6N2E2_951at 1123.436 kb on + strand, within Pf6N2E2_951at 1123.437 kb on - strand, within Pf6N2E2_951at 1123.437 kb on - strand, within Pf6N2E2_951at 1123.437 kb on - strand, within Pf6N2E2_951at 1123.440 kb on + strand, within Pf6N2E2_951at 1123.440 kb on + strand, within Pf6N2E2_951at 1123.440 kb on + strand, within Pf6N2E2_951at 1123.440 kb on + strand, within Pf6N2E2_951at 1123.440 kb on + strand, within Pf6N2E2_951at 1123.441 kb on - strand, within Pf6N2E2_951at 1123.441 kb on - strand, within Pf6N2E2_951at 1123.441 kb on - strand, within Pf6N2E2_951at 1123.538 kb on + strand, within Pf6N2E2_951at 1123.538 kb on + strand, within Pf6N2E2_951at 1123.539 kb on - strand, within Pf6N2E2_951at 1123.559 kb on + strand, within Pf6N2E2_951at 1123.559 kb on + strand, within Pf6N2E2_951at 1123.822 kb on + strandat 1123.822 kb on + strandat 1123.823 kb on - strandat 1123.823 kb on - strandat 1123.846 kb on + strandat 1123.847 kb on - strandat 1124.041 kb on + strand, within Pf6N2E2_952at 1124.041 kb on + strand, within Pf6N2E2_952at 1124.192 kb on + strand, within Pf6N2E2_952at 1124.192 kb on + strand, within Pf6N2E2_952at 1124.363 kb on - strand, within Pf6N2E2_952at 1124.456 kb on - strand, within Pf6N2E2_952at 1125.081 kb on + strandat 1125.125 kb on + strandat 1125.125 kb on + strandat 1125.126 kb on - strandat 1125.126 kb on - strandat 1125.159 kb on + strandat 1125.248 kb on - strandat 1125.530 kb on - strand, within Pf6N2E2_953at 1125.613 kb on - strand, within Pf6N2E2_953at 1125.800 kb on + strand, within Pf6N2E2_953at 1125.801 kb on - strand, within Pf6N2E2_953at 1125.925 kb on + strandat 1126.003 kb on - strandat 1126.165 kb on + strand, within Pf6N2E2_954at 1126.166 kb on - strand, within Pf6N2E2_954at 1126.168 kb on + strand, within Pf6N2E2_954at 1126.169 kb on - strand, within Pf6N2E2_954at 1126.169 kb on - strand, within Pf6N2E2_954at 1126.169 kb on - strand, within Pf6N2E2_954

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 4 mM
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1,122,782 - Pf6N2E2_950 0.80 -0.7
1,122,901 + Pf6N2E2_950 0.85 -0.4
1,122,901 + Pf6N2E2_950 0.85 -0.9
1,122,901 + Pf6N2E2_950 0.85 -1.4
1,122,902 - Pf6N2E2_950 0.85 +1.1
1,122,902 - Pf6N2E2_950 0.85 +0.6
1,122,902 - Pf6N2E2_950 0.85 -0.0
1,122,902 - Pf6N2E2_950 0.85 -0.1
1,122,902 - Pf6N2E2_950 0.85 +0.3
1,122,943 + Pf6N2E2_950 0.86 -0.6
1,122,943 + Pf6N2E2_950 0.86 +0.7
1,122,943 + Pf6N2E2_950 0.86 +0.4
1,122,943 + Pf6N2E2_950 0.86 -0.7
1,122,944 - Pf6N2E2_950 0.86 +1.2
1,122,964 + Pf6N2E2_950 0.87 +0.3
1,123,181 - +0.1
1,123,225 + +0.9
1,123,225 + -0.4
1,123,226 - +0.5
1,123,226 - -3.6
1,123,226 - +0.7
1,123,226 - +1.3
1,123,226 - +1.3
1,123,323 + -3.5
1,123,323 + +0.1
1,123,323 + -1.0
1,123,324 - +1.6
1,123,357 - Pf6N2E2_951 0.11 -0.2
1,123,371 + Pf6N2E2_951 0.16 +0.9
1,123,372 - Pf6N2E2_951 0.16 -2.1
1,123,434 + Pf6N2E2_951 0.36 +1.7
1,123,436 + Pf6N2E2_951 0.37 -0.1
1,123,436 + Pf6N2E2_951 0.37 +0.4
1,123,436 + Pf6N2E2_951 0.37 +0.7
1,123,436 + Pf6N2E2_951 0.37 +0.4
1,123,436 + Pf6N2E2_951 0.37 -0.4
1,123,436 + Pf6N2E2_951 0.37 +1.1
1,123,436 + Pf6N2E2_951 0.37 +0.2
1,123,436 + Pf6N2E2_951 0.37 -0.4
1,123,436 + Pf6N2E2_951 0.37 -0.1
1,123,436 + Pf6N2E2_951 0.37 +0.2
1,123,436 + Pf6N2E2_951 0.37 +1.9
1,123,437 - Pf6N2E2_951 0.37 -0.9
1,123,437 - Pf6N2E2_951 0.37 -2.8
1,123,437 - Pf6N2E2_951 0.37 -2.3
1,123,440 + Pf6N2E2_951 0.38 -1.5
1,123,440 + Pf6N2E2_951 0.38 -0.5
1,123,440 + Pf6N2E2_951 0.38 -1.0
1,123,440 + Pf6N2E2_951 0.38 -0.2
1,123,440 + Pf6N2E2_951 0.38 +0.3
1,123,441 - Pf6N2E2_951 0.39 +0.9
1,123,441 - Pf6N2E2_951 0.39 -3.5
1,123,441 - Pf6N2E2_951 0.39 -0.3
1,123,538 + Pf6N2E2_951 0.70 +0.6
1,123,538 + Pf6N2E2_951 0.70 -0.8
1,123,539 - Pf6N2E2_951 0.70 -0.6
1,123,559 + Pf6N2E2_951 0.77 -1.6
1,123,559 + Pf6N2E2_951 0.77 -0.2
1,123,822 + +0.3
1,123,822 + +1.8
1,123,823 - +0.4
1,123,823 - -0.0
1,123,846 + +0.5
1,123,847 - +1.0
1,124,041 + Pf6N2E2_952 0.22 -3.1
1,124,041 + Pf6N2E2_952 0.22 -2.9
1,124,192 + Pf6N2E2_952 0.32 -0.4
1,124,192 + Pf6N2E2_952 0.32 -1.0
1,124,363 - Pf6N2E2_952 0.44 -0.5
1,124,456 - Pf6N2E2_952 0.50 -3.4
1,125,081 + +1.3
1,125,125 + -0.3
1,125,125 + -3.0
1,125,126 - +0.4
1,125,126 - -1.2
1,125,159 + +1.2
1,125,248 - -2.0
1,125,530 - Pf6N2E2_953 0.48 +0.2
1,125,613 - Pf6N2E2_953 0.60 -3.9
1,125,800 + Pf6N2E2_953 0.87 +0.2
1,125,801 - Pf6N2E2_953 0.87 +2.5
1,125,925 + -1.2
1,126,003 - +1.1
1,126,165 + Pf6N2E2_954 0.24 +1.0
1,126,166 - Pf6N2E2_954 0.24 +0.5
1,126,168 + Pf6N2E2_954 0.25 +1.9
1,126,169 - Pf6N2E2_954 0.25 +0.6
1,126,169 - Pf6N2E2_954 0.25 +0.8
1,126,169 - Pf6N2E2_954 0.25 +0.4

Or see this region's nucleotide sequence