Experiment: Aluminum chloride 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_950 and Pf6N2E2_951 overlap by 1 nucleotides Pf6N2E2_951 and Pf6N2E2_952 are separated by 70 nucleotides Pf6N2E2_952 and Pf6N2E2_953 overlap by 11 nucleotides Pf6N2E2_953 and Pf6N2E2_954 are separated by 125 nucleotides
Pf6N2E2_950 - Type IV secretory pathway, VirB4 components, at 1,120,572 to 1,123,322
_950
Pf6N2E2_951 - putative lipoprotein, at 1,123,322 to 1,123,630
_951
Pf6N2E2_952 - putative exported protein, at 1,123,701 to 1,125,215
_952
Pf6N2E2_953 - FIG00958851: hypothetical protein, at 1,125,205 to 1,125,888
_953
Pf6N2E2_954 - Possible exported protein, at 1,126,014 to 1,126,634
_954
Position (kb)
1123
1124
1125
1126 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1122.782 kb on - strand, within Pf6N2E2_950 at 1122.901 kb on + strand, within Pf6N2E2_950 at 1122.901 kb on + strand, within Pf6N2E2_950 at 1122.901 kb on + strand, within Pf6N2E2_950 at 1122.902 kb on - strand, within Pf6N2E2_950 at 1122.902 kb on - strand, within Pf6N2E2_950 at 1122.902 kb on - strand, within Pf6N2E2_950 at 1122.902 kb on - strand, within Pf6N2E2_950 at 1122.902 kb on - strand, within Pf6N2E2_950 at 1122.943 kb on + strand, within Pf6N2E2_950 at 1122.943 kb on + strand, within Pf6N2E2_950 at 1122.943 kb on + strand, within Pf6N2E2_950 at 1122.943 kb on + strand, within Pf6N2E2_950 at 1122.944 kb on - strand, within Pf6N2E2_950 at 1122.964 kb on + strand, within Pf6N2E2_950 at 1123.181 kb on - strand at 1123.225 kb on + strand at 1123.225 kb on + strand at 1123.226 kb on - strand at 1123.226 kb on - strand at 1123.226 kb on - strand at 1123.226 kb on - strand at 1123.226 kb on - strand at 1123.323 kb on + strand at 1123.323 kb on + strand at 1123.323 kb on + strand at 1123.324 kb on - strand at 1123.357 kb on - strand, within Pf6N2E2_951 at 1123.371 kb on + strand, within Pf6N2E2_951 at 1123.372 kb on - strand, within Pf6N2E2_951 at 1123.434 kb on + strand, within Pf6N2E2_951 at 1123.436 kb on + strand, within Pf6N2E2_951 at 1123.436 kb on + strand, within Pf6N2E2_951 at 1123.436 kb on + strand, within Pf6N2E2_951 at 1123.436 kb on + strand, within Pf6N2E2_951 at 1123.436 kb on + strand, within Pf6N2E2_951 at 1123.436 kb on + strand, within Pf6N2E2_951 at 1123.436 kb on + strand, within Pf6N2E2_951 at 1123.436 kb on + strand, within Pf6N2E2_951 at 1123.436 kb on + strand, within Pf6N2E2_951 at 1123.436 kb on + strand, within Pf6N2E2_951 at 1123.436 kb on + strand, within Pf6N2E2_951 at 1123.437 kb on - strand, within Pf6N2E2_951 at 1123.437 kb on - strand, within Pf6N2E2_951 at 1123.437 kb on - strand, within Pf6N2E2_951 at 1123.440 kb on + strand, within Pf6N2E2_951 at 1123.440 kb on + strand, within Pf6N2E2_951 at 1123.440 kb on + strand, within Pf6N2E2_951 at 1123.440 kb on + strand, within Pf6N2E2_951 at 1123.440 kb on + strand, within Pf6N2E2_951 at 1123.441 kb on - strand, within Pf6N2E2_951 at 1123.441 kb on - strand, within Pf6N2E2_951 at 1123.441 kb on - strand, within Pf6N2E2_951 at 1123.538 kb on + strand, within Pf6N2E2_951 at 1123.538 kb on + strand, within Pf6N2E2_951 at 1123.539 kb on - strand, within Pf6N2E2_951 at 1123.559 kb on + strand, within Pf6N2E2_951 at 1123.559 kb on + strand, within Pf6N2E2_951 at 1123.822 kb on + strand at 1123.822 kb on + strand at 1123.823 kb on - strand at 1123.823 kb on - strand at 1123.846 kb on + strand at 1123.847 kb on - strand at 1124.041 kb on + strand, within Pf6N2E2_952 at 1124.041 kb on + strand, within Pf6N2E2_952 at 1124.192 kb on + strand, within Pf6N2E2_952 at 1124.192 kb on + strand, within Pf6N2E2_952 at 1124.363 kb on - strand, within Pf6N2E2_952 at 1124.456 kb on - strand, within Pf6N2E2_952 at 1125.081 kb on + strand at 1125.125 kb on + strand at 1125.125 kb on + strand at 1125.126 kb on - strand at 1125.126 kb on - strand at 1125.159 kb on + strand at 1125.248 kb on - strand at 1125.530 kb on - strand, within Pf6N2E2_953 at 1125.613 kb on - strand, within Pf6N2E2_953 at 1125.800 kb on + strand, within Pf6N2E2_953 at 1125.801 kb on - strand, within Pf6N2E2_953 at 1125.925 kb on + strand at 1126.003 kb on - strand at 1126.165 kb on + strand, within Pf6N2E2_954 at 1126.166 kb on - strand, within Pf6N2E2_954 at 1126.168 kb on + strand, within Pf6N2E2_954 at 1126.169 kb on - strand, within Pf6N2E2_954 at 1126.169 kb on - strand, within Pf6N2E2_954 at 1126.169 kb on - strand, within Pf6N2E2_954
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 4 mM remove 1,122,782 - Pf6N2E2_950 0.80 -0.7 1,122,901 + Pf6N2E2_950 0.85 -0.4 1,122,901 + Pf6N2E2_950 0.85 -0.9 1,122,901 + Pf6N2E2_950 0.85 -1.4 1,122,902 - Pf6N2E2_950 0.85 +1.1 1,122,902 - Pf6N2E2_950 0.85 +0.6 1,122,902 - Pf6N2E2_950 0.85 -0.0 1,122,902 - Pf6N2E2_950 0.85 -0.1 1,122,902 - Pf6N2E2_950 0.85 +0.3 1,122,943 + Pf6N2E2_950 0.86 -0.6 1,122,943 + Pf6N2E2_950 0.86 +0.7 1,122,943 + Pf6N2E2_950 0.86 +0.4 1,122,943 + Pf6N2E2_950 0.86 -0.7 1,122,944 - Pf6N2E2_950 0.86 +1.2 1,122,964 + Pf6N2E2_950 0.87 +0.3 1,123,181 - +0.1 1,123,225 + +0.9 1,123,225 + -0.4 1,123,226 - +0.5 1,123,226 - -3.6 1,123,226 - +0.7 1,123,226 - +1.3 1,123,226 - +1.3 1,123,323 + -3.5 1,123,323 + +0.1 1,123,323 + -1.0 1,123,324 - +1.6 1,123,357 - Pf6N2E2_951 0.11 -0.2 1,123,371 + Pf6N2E2_951 0.16 +0.9 1,123,372 - Pf6N2E2_951 0.16 -2.1 1,123,434 + Pf6N2E2_951 0.36 +1.7 1,123,436 + Pf6N2E2_951 0.37 -0.1 1,123,436 + Pf6N2E2_951 0.37 +0.4 1,123,436 + Pf6N2E2_951 0.37 +0.7 1,123,436 + Pf6N2E2_951 0.37 +0.4 1,123,436 + Pf6N2E2_951 0.37 -0.4 1,123,436 + Pf6N2E2_951 0.37 +1.1 1,123,436 + Pf6N2E2_951 0.37 +0.2 1,123,436 + Pf6N2E2_951 0.37 -0.4 1,123,436 + Pf6N2E2_951 0.37 -0.1 1,123,436 + Pf6N2E2_951 0.37 +0.2 1,123,436 + Pf6N2E2_951 0.37 +1.9 1,123,437 - Pf6N2E2_951 0.37 -0.9 1,123,437 - Pf6N2E2_951 0.37 -2.8 1,123,437 - Pf6N2E2_951 0.37 -2.3 1,123,440 + Pf6N2E2_951 0.38 -1.5 1,123,440 + Pf6N2E2_951 0.38 -0.5 1,123,440 + Pf6N2E2_951 0.38 -1.0 1,123,440 + Pf6N2E2_951 0.38 -0.2 1,123,440 + Pf6N2E2_951 0.38 +0.3 1,123,441 - Pf6N2E2_951 0.39 +0.9 1,123,441 - Pf6N2E2_951 0.39 -3.5 1,123,441 - Pf6N2E2_951 0.39 -0.3 1,123,538 + Pf6N2E2_951 0.70 +0.6 1,123,538 + Pf6N2E2_951 0.70 -0.8 1,123,539 - Pf6N2E2_951 0.70 -0.6 1,123,559 + Pf6N2E2_951 0.77 -1.6 1,123,559 + Pf6N2E2_951 0.77 -0.2 1,123,822 + +0.3 1,123,822 + +1.8 1,123,823 - +0.4 1,123,823 - -0.0 1,123,846 + +0.5 1,123,847 - +1.0 1,124,041 + Pf6N2E2_952 0.22 -3.1 1,124,041 + Pf6N2E2_952 0.22 -2.9 1,124,192 + Pf6N2E2_952 0.32 -0.4 1,124,192 + Pf6N2E2_952 0.32 -1.0 1,124,363 - Pf6N2E2_952 0.44 -0.5 1,124,456 - Pf6N2E2_952 0.50 -3.4 1,125,081 + +1.3 1,125,125 + -0.3 1,125,125 + -3.0 1,125,126 - +0.4 1,125,126 - -1.2 1,125,159 + +1.2 1,125,248 - -2.0 1,125,530 - Pf6N2E2_953 0.48 +0.2 1,125,613 - Pf6N2E2_953 0.60 -3.9 1,125,800 + Pf6N2E2_953 0.87 +0.2 1,125,801 - Pf6N2E2_953 0.87 +2.5 1,125,925 + -1.2 1,126,003 - +1.1 1,126,165 + Pf6N2E2_954 0.24 +1.0 1,126,166 - Pf6N2E2_954 0.24 +0.5 1,126,168 + Pf6N2E2_954 0.25 +1.9 1,126,169 - Pf6N2E2_954 0.25 +0.6 1,126,169 - Pf6N2E2_954 0.25 +0.8 1,126,169 - Pf6N2E2_954 0.25 +0.4
Or see this region's nucleotide sequence