Experiment: Aluminum chloride 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5643 and Pf6N2E2_5644 overlap by 4 nucleotides Pf6N2E2_5644 and Pf6N2E2_5645 are separated by 14 nucleotides Pf6N2E2_5645 and Pf6N2E2_5646 are separated by 236 nucleotides Pf6N2E2_5646 and Pf6N2E2_5647 are separated by 23 nucleotides
Pf6N2E2_5643 - hypothetical protein, at 6,457,261 to 6,457,575
_5643
Pf6N2E2_5644 - CTP synthase (EC 6.3.4.2), at 6,457,572 to 6,458,282
_5644
Pf6N2E2_5645 - Transcriptional regulator, LysR family, at 6,458,297 to 6,459,244
_5645
Pf6N2E2_5646 - PROBABLE MEMBRANE PROTEIN, at 6,459,481 to 6,459,870
_5646
Pf6N2E2_5647 - Transcriptional regulator, TetR family, at 6,459,894 to 6,460,502
_5647
Position (kb)
6458
6459
6460 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 6457.311 kb on + strand, within Pf6N2E2_5643 at 6457.323 kb on + strand, within Pf6N2E2_5643 at 6457.323 kb on + strand, within Pf6N2E2_5643 at 6457.324 kb on - strand, within Pf6N2E2_5643 at 6457.324 kb on - strand, within Pf6N2E2_5643 at 6457.324 kb on - strand, within Pf6N2E2_5643 at 6457.324 kb on - strand, within Pf6N2E2_5643 at 6457.325 kb on + strand, within Pf6N2E2_5643 at 6457.325 kb on + strand, within Pf6N2E2_5643 at 6457.326 kb on - strand, within Pf6N2E2_5643 at 6457.409 kb on + strand, within Pf6N2E2_5643 at 6457.410 kb on - strand, within Pf6N2E2_5643 at 6457.514 kb on + strand, within Pf6N2E2_5643 at 6457.559 kb on + strand at 6457.559 kb on + strand at 6457.559 kb on + strand at 6457.559 kb on + strand at 6457.562 kb on + strand at 6457.562 kb on + strand at 6457.822 kb on + strand, within Pf6N2E2_5644 at 6457.823 kb on - strand, within Pf6N2E2_5644 at 6457.823 kb on - strand, within Pf6N2E2_5644 at 6457.823 kb on - strand, within Pf6N2E2_5644 at 6457.913 kb on + strand, within Pf6N2E2_5644 at 6457.914 kb on - strand, within Pf6N2E2_5644 at 6458.115 kb on + strand, within Pf6N2E2_5644 at 6458.115 kb on + strand, within Pf6N2E2_5644 at 6458.115 kb on + strand, within Pf6N2E2_5644 at 6458.115 kb on + strand, within Pf6N2E2_5644 at 6458.115 kb on + strand, within Pf6N2E2_5644 at 6458.116 kb on - strand, within Pf6N2E2_5644 at 6458.116 kb on - strand, within Pf6N2E2_5644 at 6458.262 kb on + strand at 6458.262 kb on + strand at 6458.262 kb on + strand at 6458.263 kb on - strand at 6458.263 kb on - strand at 6458.320 kb on + strand at 6458.320 kb on + strand at 6458.320 kb on + strand at 6458.320 kb on + strand at 6458.320 kb on + strand at 6458.321 kb on - strand at 6458.321 kb on - strand at 6458.321 kb on - strand at 6458.344 kb on - strand at 6458.355 kb on + strand at 6458.356 kb on - strand at 6458.356 kb on - strand at 6458.493 kb on + strand, within Pf6N2E2_5645 at 6458.494 kb on - strand, within Pf6N2E2_5645 at 6458.894 kb on + strand, within Pf6N2E2_5645 at 6458.895 kb on - strand, within Pf6N2E2_5645 at 6458.895 kb on - strand, within Pf6N2E2_5645 at 6458.895 kb on - strand, within Pf6N2E2_5645 at 6458.895 kb on - strand, within Pf6N2E2_5645 at 6458.912 kb on - strand, within Pf6N2E2_5645 at 6459.144 kb on - strand, within Pf6N2E2_5645 at 6459.144 kb on - strand, within Pf6N2E2_5645 at 6459.296 kb on + strand at 6459.298 kb on + strand at 6459.298 kb on + strand at 6459.298 kb on + strand at 6459.298 kb on + strand at 6459.299 kb on - strand at 6459.299 kb on - strand at 6459.299 kb on - strand at 6459.299 kb on - strand at 6459.559 kb on + strand, within Pf6N2E2_5646 at 6459.604 kb on + strand, within Pf6N2E2_5646 at 6459.604 kb on + strand, within Pf6N2E2_5646 at 6459.868 kb on + strand at 6459.869 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 4 mM remove 6,457,311 + Pf6N2E2_5643 0.16 +0.5 6,457,323 + Pf6N2E2_5643 0.20 -1.5 6,457,323 + Pf6N2E2_5643 0.20 +2.5 6,457,324 - Pf6N2E2_5643 0.20 -1.6 6,457,324 - Pf6N2E2_5643 0.20 +1.0 6,457,324 - Pf6N2E2_5643 0.20 +0.4 6,457,324 - Pf6N2E2_5643 0.20 +0.9 6,457,325 + Pf6N2E2_5643 0.20 +0.6 6,457,325 + Pf6N2E2_5643 0.20 -0.0 6,457,326 - Pf6N2E2_5643 0.21 +0.7 6,457,409 + Pf6N2E2_5643 0.47 -0.5 6,457,410 - Pf6N2E2_5643 0.47 -1.7 6,457,514 + Pf6N2E2_5643 0.80 -1.1 6,457,559 + -0.1 6,457,559 + +0.3 6,457,559 + -0.1 6,457,559 + +1.1 6,457,562 + +2.6 6,457,562 + +1.0 6,457,822 + Pf6N2E2_5644 0.35 -0.7 6,457,823 - Pf6N2E2_5644 0.35 +0.3 6,457,823 - Pf6N2E2_5644 0.35 +0.8 6,457,823 - Pf6N2E2_5644 0.35 +1.2 6,457,913 + Pf6N2E2_5644 0.48 +0.7 6,457,914 - Pf6N2E2_5644 0.48 +0.6 6,458,115 + Pf6N2E2_5644 0.76 -0.4 6,458,115 + Pf6N2E2_5644 0.76 +0.1 6,458,115 + Pf6N2E2_5644 0.76 +1.2 6,458,115 + Pf6N2E2_5644 0.76 -0.6 6,458,115 + Pf6N2E2_5644 0.76 +0.6 6,458,116 - Pf6N2E2_5644 0.77 +1.2 6,458,116 - Pf6N2E2_5644 0.77 -0.0 6,458,262 + -1.2 6,458,262 + -0.3 6,458,262 + +0.7 6,458,263 - +0.6 6,458,263 - -0.3 6,458,320 + +1.0 6,458,320 + +0.6 6,458,320 + -0.2 6,458,320 + -0.8 6,458,320 + +1.9 6,458,321 - +1.2 6,458,321 - -0.5 6,458,321 - +0.2 6,458,344 - -1.0 6,458,355 + -1.7 6,458,356 - +0.2 6,458,356 - -0.7 6,458,493 + Pf6N2E2_5645 0.21 -4.4 6,458,494 - Pf6N2E2_5645 0.21 +2.1 6,458,894 + Pf6N2E2_5645 0.63 +1.2 6,458,895 - Pf6N2E2_5645 0.63 +0.5 6,458,895 - Pf6N2E2_5645 0.63 +1.0 6,458,895 - Pf6N2E2_5645 0.63 -3.2 6,458,895 - Pf6N2E2_5645 0.63 -0.1 6,458,912 - Pf6N2E2_5645 0.65 +0.9 6,459,144 - Pf6N2E2_5645 0.89 +1.4 6,459,144 - Pf6N2E2_5645 0.89 +0.2 6,459,296 + +0.2 6,459,298 + +3.1 6,459,298 + -0.0 6,459,298 + -1.4 6,459,298 + +1.1 6,459,299 - -1.2 6,459,299 - -2.2 6,459,299 - +2.0 6,459,299 - -2.3 6,459,559 + Pf6N2E2_5646 0.20 -0.1 6,459,604 + Pf6N2E2_5646 0.32 -3.4 6,459,604 + Pf6N2E2_5646 0.32 -0.6 6,459,868 + -0.4 6,459,869 - -1.5
Or see this region's nucleotide sequence