Experiment: Aluminum chloride 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5527 and Pf6N2E2_5528 are separated by 177 nucleotides Pf6N2E2_5528 and Pf6N2E2_5529 are separated by 55 nucleotides Pf6N2E2_5529 and Pf6N2E2_5530 are separated by 302 nucleotides Pf6N2E2_5530 and Pf6N2E2_5531 are separated by 3 nucleotides Pf6N2E2_5531 and Pf6N2E2_5532 are separated by 21 nucleotides
Pf6N2E2_5527 - Cold shock protein CspC, at 6,346,486 to 6,347,091
_5527
Pf6N2E2_5528 - hypothetical protein, at 6,347,269 to 6,347,430
_5528
Pf6N2E2_5529 - Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1), at 6,347,486 to 6,347,956
_5529
Pf6N2E2_5530 - FIG00955846: hypothetical protein, at 6,348,259 to 6,348,603
_5530
Pf6N2E2_5531 - hypothetical protein, at 6,348,607 to 6,348,771
_5531
Pf6N2E2_5532 - Glycerate kinase (EC 2.7.1.31), at 6,348,793 to 6,348,972
_5532
Position (kb)
6347
6348 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 6346.669 kb on - strand, within Pf6N2E2_5527 at 6346.713 kb on - strand, within Pf6N2E2_5527 at 6346.982 kb on + strand, within Pf6N2E2_5527 at 6347.006 kb on + strand, within Pf6N2E2_5527 at 6347.178 kb on + strand at 6347.193 kb on - strand at 6347.193 kb on - strand at 6347.214 kb on - strand at 6347.235 kb on - strand at 6347.235 kb on - strand at 6347.238 kb on + strand at 6347.239 kb on - strand at 6347.239 kb on - strand at 6347.239 kb on - strand at 6347.239 kb on - strand at 6347.239 kb on - strand at 6347.244 kb on + strand at 6347.245 kb on - strand at 6347.245 kb on - strand at 6347.438 kb on - strand at 6347.564 kb on + strand, within Pf6N2E2_5529 at 6347.564 kb on + strand, within Pf6N2E2_5529 at 6347.564 kb on + strand, within Pf6N2E2_5529 at 6347.564 kb on + strand, within Pf6N2E2_5529 at 6347.564 kb on + strand, within Pf6N2E2_5529 at 6347.564 kb on + strand, within Pf6N2E2_5529 at 6347.564 kb on + strand, within Pf6N2E2_5529 at 6347.564 kb on + strand, within Pf6N2E2_5529 at 6347.564 kb on + strand, within Pf6N2E2_5529 at 6347.564 kb on + strand, within Pf6N2E2_5529 at 6347.564 kb on + strand, within Pf6N2E2_5529 at 6347.564 kb on + strand, within Pf6N2E2_5529 at 6347.564 kb on + strand, within Pf6N2E2_5529 at 6347.564 kb on + strand, within Pf6N2E2_5529 at 6347.564 kb on + strand, within Pf6N2E2_5529 at 6347.564 kb on + strand, within Pf6N2E2_5529 at 6347.564 kb on + strand, within Pf6N2E2_5529 at 6347.564 kb on + strand, within Pf6N2E2_5529 at 6347.565 kb on - strand, within Pf6N2E2_5529 at 6347.565 kb on - strand, within Pf6N2E2_5529 at 6347.565 kb on - strand, within Pf6N2E2_5529 at 6347.565 kb on - strand, within Pf6N2E2_5529 at 6347.565 kb on - strand, within Pf6N2E2_5529 at 6347.565 kb on - strand, within Pf6N2E2_5529 at 6347.565 kb on - strand, within Pf6N2E2_5529 at 6347.565 kb on - strand, within Pf6N2E2_5529 at 6347.565 kb on - strand, within Pf6N2E2_5529 at 6347.565 kb on - strand, within Pf6N2E2_5529 at 6347.573 kb on + strand, within Pf6N2E2_5529 at 6347.573 kb on + strand, within Pf6N2E2_5529 at 6347.573 kb on + strand, within Pf6N2E2_5529 at 6347.574 kb on - strand, within Pf6N2E2_5529 at 6347.651 kb on + strand, within Pf6N2E2_5529 at 6347.651 kb on + strand, within Pf6N2E2_5529 at 6347.651 kb on + strand, within Pf6N2E2_5529 at 6347.651 kb on + strand, within Pf6N2E2_5529 at 6347.651 kb on + strand, within Pf6N2E2_5529 at 6347.651 kb on + strand, within Pf6N2E2_5529 at 6347.651 kb on + strand, within Pf6N2E2_5529 at 6347.651 kb on + strand, within Pf6N2E2_5529 at 6347.651 kb on + strand, within Pf6N2E2_5529 at 6347.651 kb on + strand, within Pf6N2E2_5529 at 6347.651 kb on + strand, within Pf6N2E2_5529 at 6347.651 kb on + strand, within Pf6N2E2_5529 at 6347.652 kb on - strand, within Pf6N2E2_5529 at 6347.652 kb on - strand, within Pf6N2E2_5529 at 6347.727 kb on - strand, within Pf6N2E2_5529 at 6347.735 kb on + strand, within Pf6N2E2_5529 at 6347.735 kb on + strand, within Pf6N2E2_5529 at 6347.736 kb on - strand, within Pf6N2E2_5529 at 6347.752 kb on + strand, within Pf6N2E2_5529 at 6347.753 kb on - strand, within Pf6N2E2_5529 at 6347.753 kb on - strand, within Pf6N2E2_5529 at 6347.753 kb on - strand, within Pf6N2E2_5529 at 6347.753 kb on - strand, within Pf6N2E2_5529 at 6347.753 kb on - strand, within Pf6N2E2_5529 at 6347.753 kb on - strand, within Pf6N2E2_5529 at 6347.753 kb on - strand, within Pf6N2E2_5529 at 6347.753 kb on - strand, within Pf6N2E2_5529 at 6347.830 kb on + strand, within Pf6N2E2_5529 at 6347.854 kb on - strand, within Pf6N2E2_5529 at 6347.954 kb on + strand at 6347.954 kb on + strand at 6347.954 kb on + strand at 6347.955 kb on - strand at 6347.958 kb on - strand at 6347.958 kb on - strand at 6347.971 kb on + strand at 6347.971 kb on + strand at 6347.971 kb on + strand at 6347.971 kb on + strand at 6347.971 kb on + strand at 6347.971 kb on + strand at 6347.971 kb on + strand at 6347.971 kb on + strand at 6347.971 kb on + strand at 6347.972 kb on - strand at 6347.972 kb on - strand at 6347.972 kb on - strand at 6347.972 kb on - strand at 6347.972 kb on - strand at 6347.972 kb on - strand at 6347.972 kb on - strand at 6348.105 kb on + strand at 6348.105 kb on + strand at 6348.105 kb on + strand at 6348.106 kb on - strand at 6348.115 kb on + strand at 6348.115 kb on + strand at 6348.115 kb on + strand at 6348.116 kb on - strand at 6348.147 kb on + strand at 6348.147 kb on + strand at 6348.161 kb on + strand at 6348.162 kb on - strand at 6348.236 kb on + strand at 6348.236 kb on + strand at 6348.258 kb on + strand at 6348.258 kb on + strand at 6348.418 kb on + strand, within Pf6N2E2_5530 at 6348.418 kb on + strand, within Pf6N2E2_5530 at 6348.418 kb on + strand, within Pf6N2E2_5530 at 6348.418 kb on + strand, within Pf6N2E2_5530 at 6348.419 kb on - strand, within Pf6N2E2_5530 at 6348.469 kb on - strand, within Pf6N2E2_5530 at 6348.469 kb on - strand, within Pf6N2E2_5530 at 6348.469 kb on - strand, within Pf6N2E2_5530 at 6348.469 kb on - strand, within Pf6N2E2_5530 at 6348.548 kb on + strand, within Pf6N2E2_5530 at 6348.548 kb on + strand, within Pf6N2E2_5530 at 6348.548 kb on + strand, within Pf6N2E2_5530 at 6348.548 kb on + strand, within Pf6N2E2_5530 at 6348.548 kb on + strand, within Pf6N2E2_5530 at 6348.548 kb on + strand, within Pf6N2E2_5530 at 6348.548 kb on + strand, within Pf6N2E2_5530 at 6348.548 kb on + strand, within Pf6N2E2_5530 at 6348.548 kb on + strand, within Pf6N2E2_5530 at 6348.548 kb on + strand, within Pf6N2E2_5530 at 6348.548 kb on + strand, within Pf6N2E2_5530 at 6348.549 kb on - strand, within Pf6N2E2_5530 at 6348.549 kb on - strand, within Pf6N2E2_5530 at 6348.549 kb on - strand, within Pf6N2E2_5530 at 6348.549 kb on - strand, within Pf6N2E2_5530 at 6348.549 kb on - strand, within Pf6N2E2_5530 at 6348.549 kb on - strand, within Pf6N2E2_5530 at 6348.549 kb on - strand, within Pf6N2E2_5530 at 6348.549 kb on - strand, within Pf6N2E2_5530 at 6348.608 kb on + strand at 6348.609 kb on - strand at 6348.658 kb on + strand, within Pf6N2E2_5531 at 6348.679 kb on + strand, within Pf6N2E2_5531 at 6348.679 kb on + strand, within Pf6N2E2_5531 at 6348.686 kb on + strand, within Pf6N2E2_5531 at 6348.686 kb on + strand, within Pf6N2E2_5531 at 6348.688 kb on + strand, within Pf6N2E2_5531 at 6348.688 kb on + strand, within Pf6N2E2_5531 at 6348.728 kb on + strand, within Pf6N2E2_5531 at 6348.760 kb on + strand at 6348.760 kb on + strand at 6348.760 kb on + strand at 6348.760 kb on + strand at 6348.760 kb on + strand at 6348.760 kb on + strand at 6348.760 kb on + strand at 6348.760 kb on + strand at 6348.760 kb on + strand at 6348.766 kb on + strand at 6348.766 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 4 mM remove 6,346,669 - Pf6N2E2_5527 0.30 -4.1 6,346,713 - Pf6N2E2_5527 0.37 -1.1 6,346,982 + Pf6N2E2_5527 0.82 -3.3 6,347,006 + Pf6N2E2_5527 0.86 -2.0 6,347,178 + -4.0 6,347,193 - +0.6 6,347,193 - +1.1 6,347,214 - +1.1 6,347,235 - +0.3 6,347,235 - +1.8 6,347,238 + -2.9 6,347,239 - +1.1 6,347,239 - +0.3 6,347,239 - -0.7 6,347,239 - +1.4 6,347,239 - +0.2 6,347,244 + -2.8 6,347,245 - -0.5 6,347,245 - -0.4 6,347,438 - -1.6 6,347,564 + Pf6N2E2_5529 0.17 +0.9 6,347,564 + Pf6N2E2_5529 0.17 -0.1 6,347,564 + Pf6N2E2_5529 0.17 -0.2 6,347,564 + Pf6N2E2_5529 0.17 +0.5 6,347,564 + Pf6N2E2_5529 0.17 -1.6 6,347,564 + Pf6N2E2_5529 0.17 +1.5 6,347,564 + Pf6N2E2_5529 0.17 +0.5 6,347,564 + Pf6N2E2_5529 0.17 -0.5 6,347,564 + Pf6N2E2_5529 0.17 -0.8 6,347,564 + Pf6N2E2_5529 0.17 +0.5 6,347,564 + Pf6N2E2_5529 0.17 -0.0 6,347,564 + Pf6N2E2_5529 0.17 -0.6 6,347,564 + Pf6N2E2_5529 0.17 +1.1 6,347,564 + Pf6N2E2_5529 0.17 +0.9 6,347,564 + Pf6N2E2_5529 0.17 -3.0 6,347,564 + Pf6N2E2_5529 0.17 +1.3 6,347,564 + Pf6N2E2_5529 0.17 +0.7 6,347,564 + Pf6N2E2_5529 0.17 -0.9 6,347,565 - Pf6N2E2_5529 0.17 -2.8 6,347,565 - Pf6N2E2_5529 0.17 +0.9 6,347,565 - Pf6N2E2_5529 0.17 +1.3 6,347,565 - Pf6N2E2_5529 0.17 +1.5 6,347,565 - Pf6N2E2_5529 0.17 +2.4 6,347,565 - Pf6N2E2_5529 0.17 +0.8 6,347,565 - Pf6N2E2_5529 0.17 +0.3 6,347,565 - Pf6N2E2_5529 0.17 +0.9 6,347,565 - Pf6N2E2_5529 0.17 -0.7 6,347,565 - Pf6N2E2_5529 0.17 +1.5 6,347,573 + Pf6N2E2_5529 0.18 +0.8 6,347,573 + Pf6N2E2_5529 0.18 -0.1 6,347,573 + Pf6N2E2_5529 0.18 +1.1 6,347,574 - Pf6N2E2_5529 0.19 +0.6 6,347,651 + Pf6N2E2_5529 0.35 +0.6 6,347,651 + Pf6N2E2_5529 0.35 -1.1 6,347,651 + Pf6N2E2_5529 0.35 +1.4 6,347,651 + Pf6N2E2_5529 0.35 +1.2 6,347,651 + Pf6N2E2_5529 0.35 -1.4 6,347,651 + Pf6N2E2_5529 0.35 -1.2 6,347,651 + Pf6N2E2_5529 0.35 +0.8 6,347,651 + Pf6N2E2_5529 0.35 +0.4 6,347,651 + Pf6N2E2_5529 0.35 +1.6 6,347,651 + Pf6N2E2_5529 0.35 +0.8 6,347,651 + Pf6N2E2_5529 0.35 +1.6 6,347,651 + Pf6N2E2_5529 0.35 +1.6 6,347,652 - Pf6N2E2_5529 0.35 +3.0 6,347,652 - Pf6N2E2_5529 0.35 -0.4 6,347,727 - Pf6N2E2_5529 0.51 +0.8 6,347,735 + Pf6N2E2_5529 0.53 +1.1 6,347,735 + Pf6N2E2_5529 0.53 +1.0 6,347,736 - Pf6N2E2_5529 0.53 -3.1 6,347,752 + Pf6N2E2_5529 0.56 +1.3 6,347,753 - Pf6N2E2_5529 0.57 +0.5 6,347,753 - Pf6N2E2_5529 0.57 +0.7 6,347,753 - Pf6N2E2_5529 0.57 +0.4 6,347,753 - Pf6N2E2_5529 0.57 +0.7 6,347,753 - Pf6N2E2_5529 0.57 +0.2 6,347,753 - Pf6N2E2_5529 0.57 +0.5 6,347,753 - Pf6N2E2_5529 0.57 -1.1 6,347,753 - Pf6N2E2_5529 0.57 -3.3 6,347,830 + Pf6N2E2_5529 0.73 -0.1 6,347,854 - Pf6N2E2_5529 0.78 -2.3 6,347,954 + -0.2 6,347,954 + -0.2 6,347,954 + +1.4 6,347,955 - -1.4 6,347,958 - +0.1 6,347,958 - +1.3 6,347,971 + -1.3 6,347,971 + +1.4 6,347,971 + +1.3 6,347,971 + +0.9 6,347,971 + -0.0 6,347,971 + -0.6 6,347,971 + -0.2 6,347,971 + -0.1 6,347,971 + -1.0 6,347,972 - +0.1 6,347,972 - +0.2 6,347,972 - +0.1 6,347,972 - +0.9 6,347,972 - +0.3 6,347,972 - +0.7 6,347,972 - +0.1 6,348,105 + +0.6 6,348,105 + +0.2 6,348,105 + +1.4 6,348,106 - +0.1 6,348,115 + -1.2 6,348,115 + +0.0 6,348,115 + +0.2 6,348,116 - +0.6 6,348,147 + +0.2 6,348,147 + +0.1 6,348,161 + +0.4 6,348,162 - +0.8 6,348,236 + +1.2 6,348,236 + -0.7 6,348,258 + -0.2 6,348,258 + -0.0 6,348,418 + Pf6N2E2_5530 0.46 -1.3 6,348,418 + Pf6N2E2_5530 0.46 +0.9 6,348,418 + Pf6N2E2_5530 0.46 +0.1 6,348,418 + Pf6N2E2_5530 0.46 +0.9 6,348,419 - Pf6N2E2_5530 0.46 +0.4 6,348,469 - Pf6N2E2_5530 0.61 -0.7 6,348,469 - Pf6N2E2_5530 0.61 -0.0 6,348,469 - Pf6N2E2_5530 0.61 +0.9 6,348,469 - Pf6N2E2_5530 0.61 +0.2 6,348,548 + Pf6N2E2_5530 0.84 +0.6 6,348,548 + Pf6N2E2_5530 0.84 +0.1 6,348,548 + Pf6N2E2_5530 0.84 +0.5 6,348,548 + Pf6N2E2_5530 0.84 +1.4 6,348,548 + Pf6N2E2_5530 0.84 -0.6 6,348,548 + Pf6N2E2_5530 0.84 -1.1 6,348,548 + Pf6N2E2_5530 0.84 +0.7 6,348,548 + Pf6N2E2_5530 0.84 +1.3 6,348,548 + Pf6N2E2_5530 0.84 -1.6 6,348,548 + Pf6N2E2_5530 0.84 +1.9 6,348,548 + Pf6N2E2_5530 0.84 +0.5 6,348,549 - Pf6N2E2_5530 0.84 +1.3 6,348,549 - Pf6N2E2_5530 0.84 +0.2 6,348,549 - Pf6N2E2_5530 0.84 -1.0 6,348,549 - Pf6N2E2_5530 0.84 +0.3 6,348,549 - Pf6N2E2_5530 0.84 -1.6 6,348,549 - Pf6N2E2_5530 0.84 +1.6 6,348,549 - Pf6N2E2_5530 0.84 -0.1 6,348,549 - Pf6N2E2_5530 0.84 +0.2 6,348,608 + +0.6 6,348,609 - +1.8 6,348,658 + Pf6N2E2_5531 0.31 -1.1 6,348,679 + Pf6N2E2_5531 0.44 +0.3 6,348,679 + Pf6N2E2_5531 0.44 +0.1 6,348,686 + Pf6N2E2_5531 0.48 +0.5 6,348,686 + Pf6N2E2_5531 0.48 +1.7 6,348,688 + Pf6N2E2_5531 0.49 +2.2 6,348,688 + Pf6N2E2_5531 0.49 +1.3 6,348,728 + Pf6N2E2_5531 0.73 +0.4 6,348,760 + -0.2 6,348,760 + +0.7 6,348,760 + +0.6 6,348,760 + +1.3 6,348,760 + +0.4 6,348,760 + +0.5 6,348,760 + -1.6 6,348,760 + -0.9 6,348,760 + +0.4 6,348,766 + -2.1 6,348,766 + +0.3
Or see this region's nucleotide sequence