Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_398

Experiment: Aluminum chloride 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_397 and Pf6N2E2_398 are separated by 209 nucleotidesPf6N2E2_398 and Pf6N2E2_399 overlap by 4 nucleotides Pf6N2E2_397 - Large exoproteins involved in heme utilization or adhesion, at 465,083 to 467,020 _397 Pf6N2E2_398 - FIG006045: Sigma factor, ECF subfamily, at 467,230 to 467,736 _398 Pf6N2E2_399 - Iron siderophore sensor protein, at 467,733 to 468,656 _399 Position (kb) 467 468Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 466.418 kb on + strand, within Pf6N2E2_397at 466.419 kb on - strand, within Pf6N2E2_397at 466.419 kb on - strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strandat 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.628 kb on + strand, within Pf6N2E2_397at 466.629 kb on - strand, within Pf6N2E2_397at 466.644 kb on + strand, within Pf6N2E2_397at 466.708 kb on + strand, within Pf6N2E2_397at 466.708 kb on + strand, within Pf6N2E2_397at 466.749 kb on + strand, within Pf6N2E2_397at 466.749 kb on + strand, within Pf6N2E2_397at 466.749 kb on + strand, within Pf6N2E2_397at 466.750 kb on - strand, within Pf6N2E2_397at 466.750 kb on - strand, within Pf6N2E2_397at 466.834 kb on + strandat 466.835 kb on - strandat 466.936 kb on + strandat 466.937 kb on - strandat 466.938 kb on + strandat 466.939 kb on - strandat 466.939 kb on - strandat 466.939 kb on - strandat 466.954 kb on + strandat 466.955 kb on - strandat 467.084 kb on - strandat 467.087 kb on + strandat 467.088 kb on - strandat 467.088 kb on - strandat 467.088 kb on - strandat 467.088 kb on - strandat 467.088 kb on - strandat 467.088 kb on - strandat 467.088 kb on - strandat 467.108 kb on - strandat 467.486 kb on + strand, within Pf6N2E2_398at 467.487 kb on - strand, within Pf6N2E2_398at 467.487 kb on - strand, within Pf6N2E2_398at 467.487 kb on - strand, within Pf6N2E2_398at 467.683 kb on + strand, within Pf6N2E2_398at 467.683 kb on + strand, within Pf6N2E2_398at 467.683 kb on + strand, within Pf6N2E2_398at 467.683 kb on + strand, within Pf6N2E2_398at 467.683 kb on + strand, within Pf6N2E2_398at 467.683 kb on + strand, within Pf6N2E2_398at 467.684 kb on - strand, within Pf6N2E2_398at 467.684 kb on - strand, within Pf6N2E2_398at 467.684 kb on - strand, within Pf6N2E2_398at 467.684 kb on - strand, within Pf6N2E2_398at 467.685 kb on + strand, within Pf6N2E2_398at 467.902 kb on + strand, within Pf6N2E2_399at 467.903 kb on - strand, within Pf6N2E2_399at 467.903 kb on - strand, within Pf6N2E2_399at 468.030 kb on + strand, within Pf6N2E2_399at 468.030 kb on + strand, within Pf6N2E2_399at 468.031 kb on - strand, within Pf6N2E2_399at 468.031 kb on - strand, within Pf6N2E2_399at 468.674 kb on + strandat 468.693 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 4 mM
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466,418 + Pf6N2E2_397 0.69 +1.6
466,419 - Pf6N2E2_397 0.69 -1.4
466,419 - Pf6N2E2_397 0.69 -0.8
466,551 + Pf6N2E2_397 0.76 -1.4
466,551 + Pf6N2E2_397 0.76 -1.6
466,551 + Pf6N2E2_397 0.76 -2.8
466,551 + Pf6N2E2_397 0.76 -0.8
466,551 + Pf6N2E2_397 0.76 +0.6
466,551 + Pf6N2E2_397 0.76 +0.2
466,551 + Pf6N2E2_397 0.76 -0.3
466,551 + Pf6N2E2_397 0.76 +2.5
466,551 + Pf6N2E2_397 0.76 -0.7
466,551 + Pf6N2E2_397 0.76 -3.6
466,551 + Pf6N2E2_397 0.76 +0.0
466,551 + Pf6N2E2_397 0.76 -1.6
466,551 + Pf6N2E2_397 0.76 +0.3
466,551 + Pf6N2E2_397 0.76 -0.6
466,551 + Pf6N2E2_397 0.76 -3.1
466,552 - Pf6N2E2_397 0.76 +1.7
466,552 - Pf6N2E2_397 0.76 +0.7
466,552 - Pf6N2E2_397 0.76 +1.5
466,552 - Pf6N2E2_397 0.76 +1.5
466,552 - Pf6N2E2_397 0.76 +1.5
466,552 - Pf6N2E2_397 0.76 -0.8
466,552 - Pf6N2E2_397 0.76 +1.5
466,552 - Pf6N2E2_397 0.76 -0.7
466,552 - Pf6N2E2_397 0.76 +0.6
466,552 - +0.7
466,552 - Pf6N2E2_397 0.76 -0.2
466,552 - Pf6N2E2_397 0.76 +0.1
466,552 - Pf6N2E2_397 0.76 -0.8
466,552 - Pf6N2E2_397 0.76 -0.5
466,552 - Pf6N2E2_397 0.76 +0.7
466,552 - Pf6N2E2_397 0.76 -0.5
466,552 - Pf6N2E2_397 0.76 -0.1
466,552 - Pf6N2E2_397 0.76 +0.9
466,552 - Pf6N2E2_397 0.76 -1.3
466,552 - Pf6N2E2_397 0.76 -1.0
466,628 + Pf6N2E2_397 0.80 +0.5
466,629 - Pf6N2E2_397 0.80 -1.0
466,644 + Pf6N2E2_397 0.81 +1.1
466,708 + Pf6N2E2_397 0.84 -1.2
466,708 + Pf6N2E2_397 0.84 -1.0
466,749 + Pf6N2E2_397 0.86 -0.8
466,749 + Pf6N2E2_397 0.86 +0.4
466,749 + Pf6N2E2_397 0.86 +1.1
466,750 - Pf6N2E2_397 0.86 -1.2
466,750 - Pf6N2E2_397 0.86 +0.7
466,834 + +0.1
466,835 - +2.6
466,936 + +0.7
466,937 - -0.1
466,938 + -3.8
466,939 - -0.4
466,939 - +0.2
466,939 - -0.2
466,954 + +1.2
466,955 - -2.7
467,084 - -0.5
467,087 + -0.3
467,088 - -0.4
467,088 - +1.2
467,088 - -1.0
467,088 - +1.9
467,088 - +0.2
467,088 - -0.6
467,088 - +1.2
467,108 - +1.4
467,486 + Pf6N2E2_398 0.50 -0.7
467,487 - Pf6N2E2_398 0.51 +2.2
467,487 - Pf6N2E2_398 0.51 +1.0
467,487 - Pf6N2E2_398 0.51 +2.0
467,683 + Pf6N2E2_398 0.89 +0.4
467,683 + Pf6N2E2_398 0.89 -0.5
467,683 + Pf6N2E2_398 0.89 -1.0
467,683 + Pf6N2E2_398 0.89 +2.6
467,683 + Pf6N2E2_398 0.89 +0.0
467,683 + Pf6N2E2_398 0.89 +0.4
467,684 - Pf6N2E2_398 0.90 -0.6
467,684 - Pf6N2E2_398 0.90 -0.3
467,684 - Pf6N2E2_398 0.90 +0.1
467,684 - Pf6N2E2_398 0.90 +1.7
467,685 + Pf6N2E2_398 0.90 +1.4
467,902 + Pf6N2E2_399 0.18 +1.1
467,903 - Pf6N2E2_399 0.18 -2.1
467,903 - Pf6N2E2_399 0.18 +0.9
468,030 + Pf6N2E2_399 0.32 +0.8
468,030 + Pf6N2E2_399 0.32 +0.7
468,031 - Pf6N2E2_399 0.32 -0.9
468,031 - Pf6N2E2_399 0.32 -1.2
468,674 + +0.8
468,693 + +2.0

Or see this region's nucleotide sequence