Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2729

Experiment: Aluminum chloride 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2727 and Pf6N2E2_2728 are separated by 121 nucleotidesPf6N2E2_2728 and Pf6N2E2_2729 are separated by 164 nucleotidesPf6N2E2_2729 and Pf6N2E2_2730 are separated by 343 nucleotides Pf6N2E2_2727 - Ribonuclease D (EC 3.1.26.3), at 3,218,125 to 3,219,258 _2727 Pf6N2E2_2728 - SAM-dependent methyltransferases, at 3,219,380 to 3,219,925 _2728 Pf6N2E2_2729 - membrane protein, putative, at 3,220,090 to 3,221,739 _2729 Pf6N2E2_2730 - glutamine synthetase family protein, at 3,222,083 to 3,223,465 _2730 Position (kb) 3220 3221 3222Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3219.135 kb on + strand, within Pf6N2E2_2727at 3219.136 kb on - strand, within Pf6N2E2_2727at 3219.136 kb on - strand, within Pf6N2E2_2727at 3219.140 kb on + strand, within Pf6N2E2_2727at 3219.141 kb on - strand, within Pf6N2E2_2727at 3219.247 kb on - strandat 3219.288 kb on + strandat 3219.288 kb on + strandat 3219.288 kb on + strandat 3219.288 kb on + strandat 3219.288 kb on + strandat 3219.288 kb on + strandat 3219.288 kb on + strandat 3219.288 kb on + strandat 3219.288 kb on + strandat 3219.289 kb on - strandat 3219.289 kb on - strandat 3219.289 kb on - strandat 3219.289 kb on - strandat 3219.289 kb on - strandat 3219.289 kb on - strandat 3219.289 kb on - strandat 3219.289 kb on - strandat 3219.289 kb on - strandat 3219.289 kb on - strandat 3219.289 kb on - strandat 3219.289 kb on - strandat 3219.289 kb on - strandat 3219.290 kb on + strandat 3219.290 kb on + strandat 3219.290 kb on + strandat 3219.290 kb on + strandat 3219.290 kb on + strandat 3219.290 kb on + strandat 3219.290 kb on + strandat 3219.290 kb on + strandat 3219.291 kb on - strandat 3219.291 kb on - strandat 3219.291 kb on - strandat 3219.291 kb on - strandat 3219.291 kb on - strandat 3219.291 kb on - strandat 3219.291 kb on - strandat 3219.291 kb on - strandat 3219.291 kb on - strandat 3219.291 kb on - strandat 3219.291 kb on - strandat 3219.291 kb on - strandat 3219.291 kb on - strandat 3219.293 kb on - strandat 3219.320 kb on + strandat 3219.363 kb on + strandat 3219.363 kb on + strandat 3219.364 kb on - strandat 3219.364 kb on - strandat 3219.364 kb on - strandat 3219.364 kb on - strandat 3219.364 kb on - strandat 3219.369 kb on + strandat 3219.369 kb on + strandat 3219.369 kb on + strandat 3219.369 kb on + strandat 3219.369 kb on + strandat 3219.369 kb on + strandat 3219.370 kb on - strandat 3219.370 kb on - strandat 3219.370 kb on - strandat 3219.370 kb on - strandat 3219.370 kb on - strandat 3219.370 kb on - strandat 3219.370 kb on - strandat 3219.381 kb on + strandat 3219.382 kb on - strandat 3219.402 kb on + strandat 3219.402 kb on + strandat 3219.403 kb on - strandat 3219.403 kb on - strandat 3219.652 kb on + strand, within Pf6N2E2_2728at 3219.652 kb on + strand, within Pf6N2E2_2728at 3219.652 kb on + strand, within Pf6N2E2_2728at 3219.652 kb on + strand, within Pf6N2E2_2728at 3219.652 kb on + strand, within Pf6N2E2_2728at 3219.652 kb on + strand, within Pf6N2E2_2728at 3219.652 kb on + strand, within Pf6N2E2_2728at 3219.652 kb on + strand, within Pf6N2E2_2728at 3219.652 kb on + strand, within Pf6N2E2_2728at 3219.652 kb on + strand, within Pf6N2E2_2728at 3219.653 kb on - strand, within Pf6N2E2_2728at 3219.653 kb on - strand, within Pf6N2E2_2728at 3219.653 kb on - strand, within Pf6N2E2_2728at 3219.653 kb on - strand, within Pf6N2E2_2728at 3219.653 kb on - strand, within Pf6N2E2_2728at 3219.653 kb on - strand, within Pf6N2E2_2728at 3219.653 kb on - strand, within Pf6N2E2_2728at 3219.653 kb on - strand, within Pf6N2E2_2728at 3219.653 kb on - strand, within Pf6N2E2_2728at 3219.890 kb on + strandat 3220.021 kb on + strandat 3220.021 kb on + strandat 3220.021 kb on + strandat 3220.021 kb on + strandat 3220.022 kb on - strandat 3220.022 kb on - strandat 3220.160 kb on + strandat 3220.160 kb on + strandat 3220.160 kb on + strandat 3220.160 kb on + strandat 3220.161 kb on - strandat 3220.161 kb on - strandat 3220.277 kb on + strand, within Pf6N2E2_2729at 3220.278 kb on - strand, within Pf6N2E2_2729at 3220.278 kb on - strand, within Pf6N2E2_2729at 3220.337 kb on + strand, within Pf6N2E2_2729at 3220.337 kb on + strand, within Pf6N2E2_2729at 3220.337 kb on + strand, within Pf6N2E2_2729at 3220.337 kb on + strand, within Pf6N2E2_2729at 3220.337 kb on + strand, within Pf6N2E2_2729at 3220.338 kb on - strand, within Pf6N2E2_2729at 3220.338 kb on - strand, within Pf6N2E2_2729at 3220.338 kb on - strand, within Pf6N2E2_2729at 3220.364 kb on + strand, within Pf6N2E2_2729at 3220.364 kb on + strand, within Pf6N2E2_2729at 3220.364 kb on + strand, within Pf6N2E2_2729at 3220.364 kb on + strand, within Pf6N2E2_2729at 3220.365 kb on - strand, within Pf6N2E2_2729at 3220.365 kb on - strand, within Pf6N2E2_2729at 3220.397 kb on + strand, within Pf6N2E2_2729at 3220.397 kb on + strand, within Pf6N2E2_2729at 3220.397 kb on + strand, within Pf6N2E2_2729at 3220.398 kb on - strand, within Pf6N2E2_2729at 3220.398 kb on - strand, within Pf6N2E2_2729at 3220.398 kb on - strand, within Pf6N2E2_2729at 3220.398 kb on - strand, within Pf6N2E2_2729at 3220.398 kb on - strand, within Pf6N2E2_2729at 3220.472 kb on + strand, within Pf6N2E2_2729at 3220.473 kb on - strand, within Pf6N2E2_2729at 3220.473 kb on - strand, within Pf6N2E2_2729at 3220.587 kb on - strand, within Pf6N2E2_2729at 3220.619 kb on - strand, within Pf6N2E2_2729at 3220.752 kb on + strand, within Pf6N2E2_2729at 3220.753 kb on - strand, within Pf6N2E2_2729at 3220.859 kb on + strand, within Pf6N2E2_2729at 3220.859 kb on + strand, within Pf6N2E2_2729at 3220.859 kb on + strand, within Pf6N2E2_2729at 3220.859 kb on + strand, within Pf6N2E2_2729at 3220.859 kb on + strand, within Pf6N2E2_2729at 3220.860 kb on - strand, within Pf6N2E2_2729at 3220.860 kb on - strand, within Pf6N2E2_2729at 3220.860 kb on - strand, within Pf6N2E2_2729at 3220.860 kb on - strand, within Pf6N2E2_2729at 3220.860 kb on - strand, within Pf6N2E2_2729at 3220.860 kb on - strand, within Pf6N2E2_2729at 3220.860 kb on - strand, within Pf6N2E2_2729at 3220.860 kb on - strand, within Pf6N2E2_2729at 3220.887 kb on + strand, within Pf6N2E2_2729at 3220.887 kb on + strand, within Pf6N2E2_2729at 3220.887 kb on + strand, within Pf6N2E2_2729at 3220.888 kb on - strand, within Pf6N2E2_2729at 3220.888 kb on - strand, within Pf6N2E2_2729at 3220.888 kb on - strand, within Pf6N2E2_2729at 3220.888 kb on - strand, within Pf6N2E2_2729at 3220.888 kb on - strand, within Pf6N2E2_2729at 3220.978 kb on - strand, within Pf6N2E2_2729at 3221.038 kb on + strand, within Pf6N2E2_2729at 3221.165 kb on + strand, within Pf6N2E2_2729at 3221.166 kb on - strand, within Pf6N2E2_2729at 3221.166 kb on - strand, within Pf6N2E2_2729at 3221.166 kb on - strand, within Pf6N2E2_2729at 3221.166 kb on - strand, within Pf6N2E2_2729at 3221.166 kb on - strand, within Pf6N2E2_2729at 3221.232 kb on - strand, within Pf6N2E2_2729at 3221.232 kb on - strand, within Pf6N2E2_2729at 3221.232 kb on - strand, within Pf6N2E2_2729at 3221.289 kb on + strand, within Pf6N2E2_2729at 3221.289 kb on + strand, within Pf6N2E2_2729at 3221.290 kb on - strand, within Pf6N2E2_2729at 3221.290 kb on - strand, within Pf6N2E2_2729at 3221.290 kb on - strand, within Pf6N2E2_2729at 3221.293 kb on + strand, within Pf6N2E2_2729at 3221.293 kb on + strand, within Pf6N2E2_2729at 3221.294 kb on - strand, within Pf6N2E2_2729at 3221.297 kb on - strand, within Pf6N2E2_2729at 3221.461 kb on + strand, within Pf6N2E2_2729at 3221.462 kb on - strand, within Pf6N2E2_2729at 3221.468 kb on + strand, within Pf6N2E2_2729at 3221.512 kb on + strand, within Pf6N2E2_2729at 3221.512 kb on + strand, within Pf6N2E2_2729at 3221.513 kb on - strand, within Pf6N2E2_2729at 3221.772 kb on + strandat 3221.868 kb on - strandat 3221.870 kb on + strandat 3221.870 kb on + strandat 3221.878 kb on + strandat 3221.879 kb on - strandat 3222.035 kb on - strandat 3222.085 kb on - strandat 3222.085 kb on - strandat 3222.085 kb on - strandat 3222.085 kb on - strandat 3222.099 kb on + strandat 3222.100 kb on - strandat 3222.168 kb on + strandat 3222.320 kb on + strand, within Pf6N2E2_2730at 3222.321 kb on - strand, within Pf6N2E2_2730at 3222.363 kb on + strand, within Pf6N2E2_2730at 3222.363 kb on + strand, within Pf6N2E2_2730at 3222.364 kb on - strand, within Pf6N2E2_2730at 3222.364 kb on - strandat 3222.364 kb on - strand, within Pf6N2E2_2730at 3222.364 kb on - strand, within Pf6N2E2_2730at 3222.388 kb on + strand, within Pf6N2E2_2730at 3222.388 kb on + strand, within Pf6N2E2_2730at 3222.389 kb on - strand, within Pf6N2E2_2730at 3222.389 kb on - strand, within Pf6N2E2_2730at 3222.483 kb on + strand, within Pf6N2E2_2730at 3222.483 kb on + strand, within Pf6N2E2_2730at 3222.483 kb on + strand, within Pf6N2E2_2730at 3222.484 kb on - strand, within Pf6N2E2_2730at 3222.484 kb on - strand, within Pf6N2E2_2730at 3222.484 kb on - strand, within Pf6N2E2_2730at 3222.484 kb on - strand, within Pf6N2E2_2730at 3222.484 kb on - strand, within Pf6N2E2_2730

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 4 mM
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3,219,135 + Pf6N2E2_2727 0.89 +1.1
3,219,136 - Pf6N2E2_2727 0.89 -2.2
3,219,136 - Pf6N2E2_2727 0.89 +1.6
3,219,140 + Pf6N2E2_2727 0.90 -0.8
3,219,141 - Pf6N2E2_2727 0.90 -2.3
3,219,247 - -1.9
3,219,288 + -2.0
3,219,288 + -0.5
3,219,288 + +0.5
3,219,288 + +0.1
3,219,288 + -0.2
3,219,288 + -2.3
3,219,288 + +0.8
3,219,288 + -0.2
3,219,288 + -0.1
3,219,289 - -0.0
3,219,289 - +1.0
3,219,289 - +1.1
3,219,289 - -1.3
3,219,289 - +0.1
3,219,289 - +0.6
3,219,289 - -0.6
3,219,289 - -0.6
3,219,289 - -2.9
3,219,289 - -0.2
3,219,289 - +1.6
3,219,289 - -0.3
3,219,289 - +1.0
3,219,290 + -1.9
3,219,290 + -1.0
3,219,290 + -0.4
3,219,290 + +0.9
3,219,290 + +1.1
3,219,290 + -0.1
3,219,290 + +0.2
3,219,290 + -0.3
3,219,291 - -0.6
3,219,291 - -0.4
3,219,291 - +2.0
3,219,291 - -0.0
3,219,291 - -1.8
3,219,291 - +1.3
3,219,291 - -0.3
3,219,291 - +1.8
3,219,291 - -0.3
3,219,291 - +0.2
3,219,291 - +0.9
3,219,291 - -1.8
3,219,291 - +1.4
3,219,293 - +0.9
3,219,320 + +1.1
3,219,363 + +0.7
3,219,363 + +0.4
3,219,364 - -0.3
3,219,364 - +0.3
3,219,364 - +0.2
3,219,364 - +1.3
3,219,364 - +0.2
3,219,369 + +1.1
3,219,369 + +1.2
3,219,369 + -3.2
3,219,369 + +0.4
3,219,369 + -0.4
3,219,369 + +0.8
3,219,370 - +0.3
3,219,370 - +1.1
3,219,370 - -2.6
3,219,370 - -0.3
3,219,370 - -3.1
3,219,370 - -1.4
3,219,370 - -2.0
3,219,381 + -0.3
3,219,382 - -3.3
3,219,402 + -1.5
3,219,402 + -1.2
3,219,403 - -0.2
3,219,403 - +1.4
3,219,652 + Pf6N2E2_2728 0.50 -1.0
3,219,652 + Pf6N2E2_2728 0.50 +0.7
3,219,652 + Pf6N2E2_2728 0.50 -2.4
3,219,652 + Pf6N2E2_2728 0.50 +0.2
3,219,652 + Pf6N2E2_2728 0.50 +1.6
3,219,652 + Pf6N2E2_2728 0.50 -0.4
3,219,652 + Pf6N2E2_2728 0.50 -1.0
3,219,652 + Pf6N2E2_2728 0.50 +0.8
3,219,652 + Pf6N2E2_2728 0.50 +0.3
3,219,652 + Pf6N2E2_2728 0.50 +1.5
3,219,653 - Pf6N2E2_2728 0.50 +1.1
3,219,653 - Pf6N2E2_2728 0.50 +1.4
3,219,653 - Pf6N2E2_2728 0.50 -0.1
3,219,653 - Pf6N2E2_2728 0.50 +0.6
3,219,653 - Pf6N2E2_2728 0.50 +0.4
3,219,653 - Pf6N2E2_2728 0.50 -1.1
3,219,653 - Pf6N2E2_2728 0.50 -1.1
3,219,653 - Pf6N2E2_2728 0.50 -1.6
3,219,653 - Pf6N2E2_2728 0.50 +0.4
3,219,890 + -1.6
3,220,021 + +2.6
3,220,021 + -3.1
3,220,021 + +1.0
3,220,021 + -0.3
3,220,022 - -0.2
3,220,022 - -0.5
3,220,160 + -3.6
3,220,160 + -1.7
3,220,160 + -1.5
3,220,160 + -3.8
3,220,161 - -3.0
3,220,161 - -2.8
3,220,277 + Pf6N2E2_2729 0.11 -2.6
3,220,278 - Pf6N2E2_2729 0.11 -2.1
3,220,278 - Pf6N2E2_2729 0.11 -3.9
3,220,337 + Pf6N2E2_2729 0.15 -3.1
3,220,337 + Pf6N2E2_2729 0.15 -2.8
3,220,337 + Pf6N2E2_2729 0.15 -3.7
3,220,337 + Pf6N2E2_2729 0.15 -3.8
3,220,337 + Pf6N2E2_2729 0.15 -3.3
3,220,338 - Pf6N2E2_2729 0.15 -3.0
3,220,338 - Pf6N2E2_2729 0.15 -2.6
3,220,338 - Pf6N2E2_2729 0.15 -4.4
3,220,364 + Pf6N2E2_2729 0.17 -1.7
3,220,364 + Pf6N2E2_2729 0.17 -2.3
3,220,364 + Pf6N2E2_2729 0.17 -4.2
3,220,364 + Pf6N2E2_2729 0.17 -1.9
3,220,365 - Pf6N2E2_2729 0.17 -3.3
3,220,365 - Pf6N2E2_2729 0.17 -2.0
3,220,397 + Pf6N2E2_2729 0.19 -1.0
3,220,397 + Pf6N2E2_2729 0.19 -2.8
3,220,397 + Pf6N2E2_2729 0.19 -3.9
3,220,398 - Pf6N2E2_2729 0.19 -3.4
3,220,398 - Pf6N2E2_2729 0.19 -2.4
3,220,398 - Pf6N2E2_2729 0.19 -3.2
3,220,398 - Pf6N2E2_2729 0.19 -4.7
3,220,398 - Pf6N2E2_2729 0.19 -2.2
3,220,472 + Pf6N2E2_2729 0.23 -2.3
3,220,473 - Pf6N2E2_2729 0.23 +0.9
3,220,473 - Pf6N2E2_2729 0.23 -1.0
3,220,587 - Pf6N2E2_2729 0.30 -0.7
3,220,619 - Pf6N2E2_2729 0.32 -3.1
3,220,752 + Pf6N2E2_2729 0.40 -2.8
3,220,753 - Pf6N2E2_2729 0.40 -4.0
3,220,859 + Pf6N2E2_2729 0.47 -2.7
3,220,859 + Pf6N2E2_2729 0.47 -1.7
3,220,859 + Pf6N2E2_2729 0.47 -2.3
3,220,859 + Pf6N2E2_2729 0.47 -3.8
3,220,859 + Pf6N2E2_2729 0.47 -2.3
3,220,860 - Pf6N2E2_2729 0.47 -3.5
3,220,860 - Pf6N2E2_2729 0.47 -2.8
3,220,860 - Pf6N2E2_2729 0.47 -3.5
3,220,860 - Pf6N2E2_2729 0.47 -1.6
3,220,860 - Pf6N2E2_2729 0.47 -4.3
3,220,860 - Pf6N2E2_2729 0.47 -3.8
3,220,860 - Pf6N2E2_2729 0.47 -3.9
3,220,860 - Pf6N2E2_2729 0.47 -3.7
3,220,887 + Pf6N2E2_2729 0.48 -2.0
3,220,887 + Pf6N2E2_2729 0.48 -3.2
3,220,887 + Pf6N2E2_2729 0.48 -0.4
3,220,888 - Pf6N2E2_2729 0.48 -4.5
3,220,888 - Pf6N2E2_2729 0.48 -3.1
3,220,888 - Pf6N2E2_2729 0.48 -2.6
3,220,888 - Pf6N2E2_2729 0.48 -0.6
3,220,888 - Pf6N2E2_2729 0.48 -3.0
3,220,978 - Pf6N2E2_2729 0.54 -2.6
3,221,038 + Pf6N2E2_2729 0.57 -2.3
3,221,165 + Pf6N2E2_2729 0.65 -2.6
3,221,166 - Pf6N2E2_2729 0.65 -3.5
3,221,166 - Pf6N2E2_2729 0.65 -2.4
3,221,166 - Pf6N2E2_2729 0.65 -4.0
3,221,166 - Pf6N2E2_2729 0.65 -3.3
3,221,166 - Pf6N2E2_2729 0.65 -3.9
3,221,232 - Pf6N2E2_2729 0.69 -2.1
3,221,232 - Pf6N2E2_2729 0.69 -3.8
3,221,232 - Pf6N2E2_2729 0.69 -1.6
3,221,289 + Pf6N2E2_2729 0.73 -4.3
3,221,289 + Pf6N2E2_2729 0.73 -3.6
3,221,290 - Pf6N2E2_2729 0.73 -4.5
3,221,290 - Pf6N2E2_2729 0.73 -3.0
3,221,290 - Pf6N2E2_2729 0.73 -3.6
3,221,293 + Pf6N2E2_2729 0.73 -2.7
3,221,293 + Pf6N2E2_2729 0.73 -3.4
3,221,294 - Pf6N2E2_2729 0.73 -3.3
3,221,297 - Pf6N2E2_2729 0.73 -3.1
3,221,461 + Pf6N2E2_2729 0.83 -0.2
3,221,462 - Pf6N2E2_2729 0.83 -3.2
3,221,468 + Pf6N2E2_2729 0.84 -2.4
3,221,512 + Pf6N2E2_2729 0.86 -2.2
3,221,512 + Pf6N2E2_2729 0.86 -2.4
3,221,513 - Pf6N2E2_2729 0.86 -2.4
3,221,772 + -3.2
3,221,868 - -3.1
3,221,870 + -2.1
3,221,870 + -3.1
3,221,878 + -3.5
3,221,879 - +0.8
3,222,035 - +1.2
3,222,085 - -0.7
3,222,085 - -1.7
3,222,085 - -1.9
3,222,085 - -3.4
3,222,099 + -3.4
3,222,100 - -0.0
3,222,168 + -2.3
3,222,320 + Pf6N2E2_2730 0.17 -2.9
3,222,321 - Pf6N2E2_2730 0.17 -0.6
3,222,363 + Pf6N2E2_2730 0.20 -4.0
3,222,363 + Pf6N2E2_2730 0.20 -1.4
3,222,364 - Pf6N2E2_2730 0.20 -0.4
3,222,364 - +1.0
3,222,364 - Pf6N2E2_2730 0.20 -1.5
3,222,364 - Pf6N2E2_2730 0.20 -0.8
3,222,388 + Pf6N2E2_2730 0.22 -3.4
3,222,388 + Pf6N2E2_2730 0.22 -2.9
3,222,389 - Pf6N2E2_2730 0.22 +0.2
3,222,389 - Pf6N2E2_2730 0.22 -2.7
3,222,483 + Pf6N2E2_2730 0.29 -0.6
3,222,483 + Pf6N2E2_2730 0.29 -1.1
3,222,483 + Pf6N2E2_2730 0.29 -2.7
3,222,484 - Pf6N2E2_2730 0.29 -3.1
3,222,484 - Pf6N2E2_2730 0.29 +1.2
3,222,484 - Pf6N2E2_2730 0.29 +0.1
3,222,484 - Pf6N2E2_2730 0.29 -1.2
3,222,484 - Pf6N2E2_2730 0.29 -0.2

Or see this region's nucleotide sequence