Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2663

Experiment: Aluminum chloride 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2662 and Pf6N2E2_2663 are separated by 389 nucleotidesPf6N2E2_2663 and Pf6N2E2_2664 are separated by 348 nucleotidesPf6N2E2_2664 and Pf6N2E2_2665 are separated by 189 nucleotides Pf6N2E2_2662 - Cytosine/purine/uracil/thiamine/allantoin permease family protein, at 3,135,030 to 3,136,484 _2662 Pf6N2E2_2663 - FIG00953341: hypothetical protein, at 3,136,874 to 3,137,710 _2663 Pf6N2E2_2664 - FIG00953551: hypothetical protein, at 3,138,059 to 3,138,238 _2664 Pf6N2E2_2665 - FIG00959721: hypothetical protein, at 3,138,428 to 3,139,144 _2665 Position (kb) 3136 3137 3138Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3136.030 kb on + strand, within Pf6N2E2_2662at 3136.060 kb on + strand, within Pf6N2E2_2662at 3136.061 kb on - strand, within Pf6N2E2_2662at 3136.121 kb on - strand, within Pf6N2E2_2662at 3136.175 kb on + strand, within Pf6N2E2_2662at 3136.176 kb on - strand, within Pf6N2E2_2662at 3136.176 kb on - strand, within Pf6N2E2_2662at 3136.355 kb on - strandat 3136.355 kb on - strandat 3136.402 kb on + strandat 3136.402 kb on + strandat 3136.402 kb on + strandat 3136.402 kb on + strandat 3136.402 kb on + strandat 3136.403 kb on - strandat 3136.403 kb on - strandat 3136.403 kb on - strandat 3136.403 kb on - strandat 3136.445 kb on - strandat 3136.459 kb on + strandat 3136.460 kb on - strandat 3136.657 kb on + strandat 3136.657 kb on + strandat 3136.657 kb on + strandat 3136.657 kb on + strandat 3136.657 kb on + strandat 3136.658 kb on - strandat 3136.658 kb on - strandat 3136.658 kb on - strandat 3136.658 kb on - strandat 3136.658 kb on - strandat 3136.658 kb on - strandat 3136.779 kb on - strandat 3136.779 kb on - strandat 3136.791 kb on + strandat 3136.792 kb on - strandat 3136.876 kb on - strandat 3136.876 kb on - strandat 3136.923 kb on + strandat 3137.206 kb on + strand, within Pf6N2E2_2663at 3137.275 kb on + strand, within Pf6N2E2_2663at 3137.276 kb on - strand, within Pf6N2E2_2663at 3137.276 kb on - strand, within Pf6N2E2_2663at 3137.276 kb on - strand, within Pf6N2E2_2663at 3137.276 kb on - strand, within Pf6N2E2_2663at 3137.276 kb on - strand, within Pf6N2E2_2663at 3137.276 kb on - strand, within Pf6N2E2_2663at 3137.277 kb on + strand, within Pf6N2E2_2663at 3137.277 kb on + strand, within Pf6N2E2_2663at 3137.277 kb on + strand, within Pf6N2E2_2663at 3137.277 kb on + strand, within Pf6N2E2_2663at 3137.277 kb on + strand, within Pf6N2E2_2663at 3137.277 kb on + strand, within Pf6N2E2_2663at 3137.278 kb on - strand, within Pf6N2E2_2663at 3137.278 kb on - strand, within Pf6N2E2_2663at 3137.278 kb on - strand, within Pf6N2E2_2663at 3137.278 kb on - strand, within Pf6N2E2_2663at 3137.278 kb on - strand, within Pf6N2E2_2663at 3137.278 kb on - strand, within Pf6N2E2_2663at 3137.278 kb on - strand, within Pf6N2E2_2663at 3137.278 kb on - strand, within Pf6N2E2_2663at 3137.278 kb on - strand, within Pf6N2E2_2663at 3137.370 kb on + strand, within Pf6N2E2_2663at 3137.603 kb on - strand, within Pf6N2E2_2663at 3137.603 kb on - strand, within Pf6N2E2_2663at 3137.605 kb on - strand, within Pf6N2E2_2663at 3137.650 kb on - strandat 3137.651 kb on + strandat 3137.652 kb on - strandat 3137.662 kb on + strandat 3137.691 kb on + strandat 3137.718 kb on - strandat 3137.909 kb on - strandat 3137.921 kb on + strandat 3137.984 kb on + strandat 3138.006 kb on + strandat 3138.015 kb on + strandat 3138.033 kb on + strandat 3138.037 kb on + strandat 3138.066 kb on + strandat 3138.237 kb on - strandat 3138.237 kb on - strandat 3138.393 kb on + strandat 3138.394 kb on - strandat 3138.394 kb on - strandat 3138.394 kb on - strandat 3138.394 kb on - strandat 3138.394 kb on - strandat 3138.434 kb on - strandat 3138.439 kb on + strandat 3138.440 kb on - strandat 3138.629 kb on + strand, within Pf6N2E2_2665at 3138.629 kb on + strand, within Pf6N2E2_2665at 3138.630 kb on - strand, within Pf6N2E2_2665at 3138.692 kb on + strand, within Pf6N2E2_2665at 3138.692 kb on + strand, within Pf6N2E2_2665at 3138.692 kb on + strand, within Pf6N2E2_2665at 3138.692 kb on + strand, within Pf6N2E2_2665at 3138.693 kb on - strand, within Pf6N2E2_2665at 3138.693 kb on - strand, within Pf6N2E2_2665at 3138.693 kb on - strand, within Pf6N2E2_2665at 3138.693 kb on - strand, within Pf6N2E2_2665at 3138.703 kb on + strand, within Pf6N2E2_2665at 3138.704 kb on - strand, within Pf6N2E2_2665

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 4 mM
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3,136,030 + Pf6N2E2_2662 0.69 +0.1
3,136,060 + Pf6N2E2_2662 0.71 +0.5
3,136,061 - Pf6N2E2_2662 0.71 +0.6
3,136,121 - Pf6N2E2_2662 0.75 +0.7
3,136,175 + Pf6N2E2_2662 0.79 +1.2
3,136,176 - Pf6N2E2_2662 0.79 +0.0
3,136,176 - Pf6N2E2_2662 0.79 +0.9
3,136,355 - +0.4
3,136,355 - -1.6
3,136,402 + +2.0
3,136,402 + +2.4
3,136,402 + +2.0
3,136,402 + +0.4
3,136,402 + -0.0
3,136,403 - -1.3
3,136,403 - -0.4
3,136,403 - -0.6
3,136,403 - +0.7
3,136,445 - +0.6
3,136,459 + +1.2
3,136,460 - +1.2
3,136,657 + +0.7
3,136,657 + -1.3
3,136,657 + -0.5
3,136,657 + +1.5
3,136,657 + -0.7
3,136,658 - -1.7
3,136,658 - -2.8
3,136,658 - +1.2
3,136,658 - +1.6
3,136,658 - +1.4
3,136,658 - -0.3
3,136,779 - -0.9
3,136,779 - -2.9
3,136,791 + +1.1
3,136,792 - +0.1
3,136,876 - +0.2
3,136,876 - +0.8
3,136,923 + +0.1
3,137,206 + Pf6N2E2_2663 0.40 +0.5
3,137,275 + Pf6N2E2_2663 0.48 -1.7
3,137,276 - Pf6N2E2_2663 0.48 -0.1
3,137,276 - Pf6N2E2_2663 0.48 +0.4
3,137,276 - Pf6N2E2_2663 0.48 -0.7
3,137,276 - Pf6N2E2_2663 0.48 -2.3
3,137,276 - Pf6N2E2_2663 0.48 -0.8
3,137,276 - Pf6N2E2_2663 0.48 +0.4
3,137,277 + Pf6N2E2_2663 0.48 -1.6
3,137,277 + Pf6N2E2_2663 0.48 -0.3
3,137,277 + Pf6N2E2_2663 0.48 -1.7
3,137,277 + Pf6N2E2_2663 0.48 -0.5
3,137,277 + Pf6N2E2_2663 0.48 -2.0
3,137,277 + Pf6N2E2_2663 0.48 -0.4
3,137,278 - Pf6N2E2_2663 0.48 -0.9
3,137,278 - Pf6N2E2_2663 0.48 -1.4
3,137,278 - Pf6N2E2_2663 0.48 -1.1
3,137,278 - Pf6N2E2_2663 0.48 -1.5
3,137,278 - Pf6N2E2_2663 0.48 +0.1
3,137,278 - Pf6N2E2_2663 0.48 -0.0
3,137,278 - Pf6N2E2_2663 0.48 -0.2
3,137,278 - Pf6N2E2_2663 0.48 -2.4
3,137,278 - Pf6N2E2_2663 0.48 +1.7
3,137,370 + Pf6N2E2_2663 0.59 -1.3
3,137,603 - Pf6N2E2_2663 0.87 +0.1
3,137,603 - Pf6N2E2_2663 0.87 -0.3
3,137,605 - Pf6N2E2_2663 0.87 +0.1
3,137,650 - +1.7
3,137,651 + -0.7
3,137,652 - -2.5
3,137,662 + +0.7
3,137,691 + -0.1
3,137,718 - +0.1
3,137,909 - +1.7
3,137,921 + +1.0
3,137,984 + -1.4
3,138,006 + +0.3
3,138,015 + +0.7
3,138,033 + +0.8
3,138,037 + -0.0
3,138,066 + +0.1
3,138,237 - +1.2
3,138,237 - -2.2
3,138,393 + +1.5
3,138,394 - -0.3
3,138,394 - -1.2
3,138,394 - +0.2
3,138,394 - -0.6
3,138,394 - -0.4
3,138,434 - -1.8
3,138,439 + +1.9
3,138,440 - +0.9
3,138,629 + Pf6N2E2_2665 0.28 -0.1
3,138,629 + Pf6N2E2_2665 0.28 -0.4
3,138,630 - Pf6N2E2_2665 0.28 -0.1
3,138,692 + Pf6N2E2_2665 0.37 +1.0
3,138,692 + Pf6N2E2_2665 0.37 -1.2
3,138,692 + Pf6N2E2_2665 0.37 -1.1
3,138,692 + Pf6N2E2_2665 0.37 +0.6
3,138,693 - Pf6N2E2_2665 0.37 +0.1
3,138,693 - Pf6N2E2_2665 0.37 +0.2
3,138,693 - Pf6N2E2_2665 0.37 -0.3
3,138,693 - Pf6N2E2_2665 0.37 +0.3
3,138,703 + Pf6N2E2_2665 0.38 -0.3
3,138,704 - Pf6N2E2_2665 0.38 +1.1

Or see this region's nucleotide sequence