Experiment: Aluminum chloride 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2624 and Pf6N2E2_2625 are separated by 11 nucleotides Pf6N2E2_2625 and Pf6N2E2_2626 are separated by 9 nucleotides Pf6N2E2_2626 and Pf6N2E2_2627 are separated by 70 nucleotides
Pf6N2E2_2624 - Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-), at 3,085,645 to 3,086,949
_2624
Pf6N2E2_2625 - Flagellar P-ring protein FlgI, at 3,086,961 to 3,088,067
_2625
Pf6N2E2_2626 - Flagellar L-ring protein FlgH, at 3,088,077 to 3,088,772
_2626
Pf6N2E2_2627 - Flagellar basal-body rod protein FlgG, at 3,088,843 to 3,089,628
_2627
Position (kb)
3086
3087
3088
3089 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3086.061 kb on - strand, within Pf6N2E2_2624 at 3086.189 kb on + strand, within Pf6N2E2_2624 at 3086.448 kb on + strand, within Pf6N2E2_2624 at 3086.520 kb on + strand, within Pf6N2E2_2624 at 3086.520 kb on + strand, within Pf6N2E2_2624 at 3086.521 kb on - strand, within Pf6N2E2_2624 at 3086.521 kb on - strand, within Pf6N2E2_2624 at 3086.521 kb on - strand, within Pf6N2E2_2624 at 3086.521 kb on - strand, within Pf6N2E2_2624 at 3086.708 kb on + strand, within Pf6N2E2_2624 at 3086.709 kb on - strand, within Pf6N2E2_2624 at 3086.709 kb on - strand, within Pf6N2E2_2624 at 3086.720 kb on + strand, within Pf6N2E2_2624 at 3086.901 kb on - strand at 3086.901 kb on - strand at 3086.940 kb on + strand at 3086.941 kb on - strand at 3086.962 kb on + strand at 3086.962 kb on + strand at 3086.962 kb on + strand at 3086.963 kb on - strand at 3086.963 kb on - strand at 3087.352 kb on + strand, within Pf6N2E2_2625 at 3087.353 kb on - strand, within Pf6N2E2_2625 at 3087.353 kb on - strand, within Pf6N2E2_2625 at 3087.353 kb on - strand, within Pf6N2E2_2625 at 3087.353 kb on - strand, within Pf6N2E2_2625 at 3087.658 kb on + strand, within Pf6N2E2_2625 at 3087.658 kb on + strand, within Pf6N2E2_2625 at 3088.058 kb on + strand at 3088.058 kb on + strand at 3088.058 kb on + strand at 3088.059 kb on - strand at 3088.078 kb on + strand at 3088.079 kb on - strand at 3088.159 kb on + strand, within Pf6N2E2_2626 at 3088.159 kb on + strand, within Pf6N2E2_2626 at 3088.159 kb on + strand, within Pf6N2E2_2626 at 3088.199 kb on + strand, within Pf6N2E2_2626 at 3088.199 kb on + strand, within Pf6N2E2_2626 at 3088.199 kb on + strand, within Pf6N2E2_2626 at 3088.199 kb on + strand, within Pf6N2E2_2626 at 3088.199 kb on + strand, within Pf6N2E2_2626 at 3088.199 kb on + strand, within Pf6N2E2_2626 at 3088.199 kb on + strand, within Pf6N2E2_2626 at 3088.200 kb on - strand, within Pf6N2E2_2626 at 3088.200 kb on - strand, within Pf6N2E2_2626 at 3088.200 kb on - strand, within Pf6N2E2_2626 at 3088.200 kb on - strand, within Pf6N2E2_2626 at 3088.209 kb on - strand, within Pf6N2E2_2626 at 3088.597 kb on + strand, within Pf6N2E2_2626 at 3088.598 kb on - strand, within Pf6N2E2_2626 at 3088.624 kb on + strand, within Pf6N2E2_2626 at 3088.681 kb on + strand, within Pf6N2E2_2626 at 3088.681 kb on + strand, within Pf6N2E2_2626 at 3088.682 kb on - strand, within Pf6N2E2_2626 at 3088.682 kb on - strand, within Pf6N2E2_2626 at 3088.682 kb on - strand, within Pf6N2E2_2626 at 3088.684 kb on + strand, within Pf6N2E2_2626 at 3088.685 kb on - strand, within Pf6N2E2_2626 at 3088.685 kb on - strand, within Pf6N2E2_2626 at 3088.685 kb on - strand, within Pf6N2E2_2626 at 3088.758 kb on + strand at 3088.758 kb on + strand at 3088.758 kb on + strand at 3088.758 kb on + strand at 3088.759 kb on - strand at 3088.759 kb on - strand at 3088.778 kb on + strand at 3088.778 kb on + strand at 3088.778 kb on + strand at 3088.779 kb on - strand at 3088.818 kb on + strand at 3088.818 kb on + strand at 3088.819 kb on - strand at 3088.819 kb on - strand at 3088.819 kb on - strand at 3088.910 kb on + strand at 3089.050 kb on + strand, within Pf6N2E2_2627
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 4 mM remove 3,086,061 - Pf6N2E2_2624 0.32 -0.3 3,086,189 + Pf6N2E2_2624 0.42 -0.5 3,086,448 + Pf6N2E2_2624 0.62 +0.5 3,086,520 + Pf6N2E2_2624 0.67 +0.0 3,086,520 + Pf6N2E2_2624 0.67 +0.7 3,086,521 - Pf6N2E2_2624 0.67 -0.0 3,086,521 - Pf6N2E2_2624 0.67 -0.2 3,086,521 - Pf6N2E2_2624 0.67 -1.2 3,086,521 - Pf6N2E2_2624 0.67 -0.3 3,086,708 + Pf6N2E2_2624 0.81 -3.3 3,086,709 - Pf6N2E2_2624 0.82 +0.4 3,086,709 - Pf6N2E2_2624 0.82 +0.5 3,086,720 + Pf6N2E2_2624 0.82 +0.1 3,086,901 - -4.2 3,086,901 - +0.6 3,086,940 + -1.0 3,086,941 - -0.9 3,086,962 + +0.1 3,086,962 + +2.0 3,086,962 + -0.0 3,086,963 - +0.7 3,086,963 - -2.1 3,087,352 + Pf6N2E2_2625 0.35 +0.2 3,087,353 - Pf6N2E2_2625 0.35 -1.2 3,087,353 - Pf6N2E2_2625 0.35 -1.5 3,087,353 - Pf6N2E2_2625 0.35 +1.0 3,087,353 - Pf6N2E2_2625 0.35 -1.7 3,087,658 + Pf6N2E2_2625 0.63 -3.5 3,087,658 + Pf6N2E2_2625 0.63 -0.9 3,088,058 + +0.3 3,088,058 + -3.1 3,088,058 + -0.2 3,088,059 - -0.5 3,088,078 + -1.2 3,088,079 - -0.2 3,088,159 + Pf6N2E2_2626 0.12 +0.2 3,088,159 + Pf6N2E2_2626 0.12 +0.5 3,088,159 + Pf6N2E2_2626 0.12 -0.1 3,088,199 + Pf6N2E2_2626 0.18 -1.1 3,088,199 + Pf6N2E2_2626 0.18 +2.5 3,088,199 + Pf6N2E2_2626 0.18 -1.4 3,088,199 + Pf6N2E2_2626 0.18 -0.3 3,088,199 + Pf6N2E2_2626 0.18 +0.4 3,088,199 + Pf6N2E2_2626 0.18 +0.2 3,088,199 + Pf6N2E2_2626 0.18 +0.4 3,088,200 - Pf6N2E2_2626 0.18 -2.0 3,088,200 - Pf6N2E2_2626 0.18 -0.4 3,088,200 - Pf6N2E2_2626 0.18 +0.2 3,088,200 - Pf6N2E2_2626 0.18 -0.1 3,088,209 - Pf6N2E2_2626 0.19 +0.3 3,088,597 + Pf6N2E2_2626 0.75 -1.0 3,088,598 - Pf6N2E2_2626 0.75 +0.3 3,088,624 + Pf6N2E2_2626 0.79 +0.2 3,088,681 + Pf6N2E2_2626 0.87 -0.2 3,088,681 + Pf6N2E2_2626 0.87 -0.5 3,088,682 - Pf6N2E2_2626 0.87 -3.0 3,088,682 - Pf6N2E2_2626 0.87 -1.2 3,088,682 - Pf6N2E2_2626 0.87 +0.2 3,088,684 + Pf6N2E2_2626 0.87 +0.6 3,088,685 - Pf6N2E2_2626 0.87 -1.3 3,088,685 - Pf6N2E2_2626 0.87 +0.2 3,088,685 - Pf6N2E2_2626 0.87 -0.1 3,088,758 + -0.6 3,088,758 + -0.8 3,088,758 + -1.2 3,088,758 + -2.1 3,088,759 - -2.1 3,088,759 - +0.2 3,088,778 + +0.5 3,088,778 + -2.7 3,088,778 + +0.6 3,088,779 - +0.8 3,088,818 + -1.1 3,088,818 + +0.5 3,088,819 - +1.6 3,088,819 - +0.3 3,088,819 - -2.2 3,088,910 + -0.2 3,089,050 + Pf6N2E2_2627 0.26 -0.4
Or see this region's nucleotide sequence