Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2566

Experiment: Aluminum chloride 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2565 and Pf6N2E2_2566 are separated by 33 nucleotidesPf6N2E2_2566 and Pf6N2E2_2567 are separated by 49 nucleotidesPf6N2E2_2567 and Pf6N2E2_2568 are separated by 15 nucleotides Pf6N2E2_2565 - CheW domain protein, at 3,022,936 to 3,023,874 _2565 Pf6N2E2_2566 - Chromosome (plasmid) partitioning protein ParA, at 3,023,908 to 3,024,699 _2566 Pf6N2E2_2567 - Flagellar motor rotation protein MotB, at 3,024,749 to 3,025,633 _2567 Pf6N2E2_2568 - Flagellar motor rotation protein MotA, at 3,025,649 to 3,026,389 _2568 Position (kb) 3023 3024 3025Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3022.937 kb on + strandat 3022.937 kb on + strandat 3023.037 kb on + strand, within Pf6N2E2_2565at 3023.037 kb on + strand, within Pf6N2E2_2565at 3023.037 kb on + strand, within Pf6N2E2_2565at 3023.037 kb on + strand, within Pf6N2E2_2565at 3023.037 kb on + strand, within Pf6N2E2_2565at 3023.037 kb on + strand, within Pf6N2E2_2565at 3023.037 kb on + strand, within Pf6N2E2_2565at 3023.037 kb on + strand, within Pf6N2E2_2565at 3023.037 kb on + strand, within Pf6N2E2_2565at 3023.037 kb on + strand, within Pf6N2E2_2565at 3023.037 kb on + strand, within Pf6N2E2_2565at 3023.037 kb on + strand, within Pf6N2E2_2565at 3023.038 kb on - strand, within Pf6N2E2_2565at 3023.038 kb on - strand, within Pf6N2E2_2565at 3023.038 kb on - strand, within Pf6N2E2_2565at 3023.038 kb on - strand, within Pf6N2E2_2565at 3023.038 kb on - strand, within Pf6N2E2_2565at 3023.038 kb on - strand, within Pf6N2E2_2565at 3023.038 kb on - strand, within Pf6N2E2_2565at 3023.038 kb on - strand, within Pf6N2E2_2565at 3023.038 kb on - strand, within Pf6N2E2_2565at 3023.052 kb on + strand, within Pf6N2E2_2565at 3023.157 kb on - strand, within Pf6N2E2_2565at 3023.177 kb on + strand, within Pf6N2E2_2565at 3023.177 kb on + strand, within Pf6N2E2_2565at 3023.178 kb on - strand, within Pf6N2E2_2565at 3023.178 kb on - strand, within Pf6N2E2_2565at 3023.606 kb on - strand, within Pf6N2E2_2565at 3023.760 kb on - strand, within Pf6N2E2_2565at 3023.760 kb on - strand, within Pf6N2E2_2565at 3023.798 kb on - strandat 3023.811 kb on + strandat 3023.909 kb on + strandat 3024.055 kb on - strand, within Pf6N2E2_2566at 3024.056 kb on + strand, within Pf6N2E2_2566at 3024.056 kb on + strand, within Pf6N2E2_2566at 3024.056 kb on + strand, within Pf6N2E2_2566at 3024.056 kb on + strand, within Pf6N2E2_2566at 3024.056 kb on + strand, within Pf6N2E2_2566at 3024.057 kb on - strand, within Pf6N2E2_2566at 3024.057 kb on - strand, within Pf6N2E2_2566at 3024.057 kb on - strand, within Pf6N2E2_2566at 3024.057 kb on - strand, within Pf6N2E2_2566at 3024.057 kb on - strand, within Pf6N2E2_2566at 3024.080 kb on + strand, within Pf6N2E2_2566at 3024.081 kb on - strand, within Pf6N2E2_2566at 3024.081 kb on - strand, within Pf6N2E2_2566at 3024.081 kb on - strand, within Pf6N2E2_2566at 3024.198 kb on + strand, within Pf6N2E2_2566at 3024.198 kb on + strand, within Pf6N2E2_2566at 3024.198 kb on + strand, within Pf6N2E2_2566at 3024.198 kb on + strand, within Pf6N2E2_2566at 3024.199 kb on - strand, within Pf6N2E2_2566at 3024.521 kb on + strand, within Pf6N2E2_2566at 3024.560 kb on + strand, within Pf6N2E2_2566at 3024.560 kb on + strand, within Pf6N2E2_2566at 3024.741 kb on + strandat 3024.741 kb on + strandat 3024.750 kb on + strandat 3024.752 kb on + strandat 3024.753 kb on - strandat 3024.753 kb on - strandat 3025.169 kb on - strand, within Pf6N2E2_2567at 3025.169 kb on - strand, within Pf6N2E2_2567at 3025.177 kb on + strand, within Pf6N2E2_2567at 3025.177 kb on + strand, within Pf6N2E2_2567at 3025.178 kb on - strand, within Pf6N2E2_2567at 3025.178 kb on - strand, within Pf6N2E2_2567at 3025.189 kb on + strand, within Pf6N2E2_2567at 3025.189 kb on + strand, within Pf6N2E2_2567at 3025.189 kb on + strand, within Pf6N2E2_2567at 3025.500 kb on + strand, within Pf6N2E2_2567at 3025.501 kb on - strand, within Pf6N2E2_2567at 3025.501 kb on - strand, within Pf6N2E2_2567at 3025.501 kb on - strand, within Pf6N2E2_2567at 3025.531 kb on - strand, within Pf6N2E2_2567at 3025.531 kb on - strand, within Pf6N2E2_2567at 3025.531 kb on - strand, within Pf6N2E2_2567at 3025.561 kb on + strandat 3025.561 kb on + strandat 3025.575 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 4 mM
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3,022,937 + +0.8
3,022,937 + +1.2
3,023,037 + Pf6N2E2_2565 0.11 -1.2
3,023,037 + Pf6N2E2_2565 0.11 -1.5
3,023,037 + Pf6N2E2_2565 0.11 -0.6
3,023,037 + Pf6N2E2_2565 0.11 -1.3
3,023,037 + Pf6N2E2_2565 0.11 -1.1
3,023,037 + Pf6N2E2_2565 0.11 +0.7
3,023,037 + Pf6N2E2_2565 0.11 -1.3
3,023,037 + Pf6N2E2_2565 0.11 -2.1
3,023,037 + Pf6N2E2_2565 0.11 +0.8
3,023,037 + Pf6N2E2_2565 0.11 +0.5
3,023,037 + Pf6N2E2_2565 0.11 -0.5
3,023,037 + Pf6N2E2_2565 0.11 -0.6
3,023,038 - Pf6N2E2_2565 0.11 -3.0
3,023,038 - Pf6N2E2_2565 0.11 +0.6
3,023,038 - Pf6N2E2_2565 0.11 -0.1
3,023,038 - Pf6N2E2_2565 0.11 -2.1
3,023,038 - Pf6N2E2_2565 0.11 +1.1
3,023,038 - Pf6N2E2_2565 0.11 +0.2
3,023,038 - Pf6N2E2_2565 0.11 -0.2
3,023,038 - Pf6N2E2_2565 0.11 -0.0
3,023,038 - Pf6N2E2_2565 0.11 -0.6
3,023,052 + Pf6N2E2_2565 0.12 +1.4
3,023,157 - Pf6N2E2_2565 0.24 +0.9
3,023,177 + Pf6N2E2_2565 0.26 +1.1
3,023,177 + Pf6N2E2_2565 0.26 -0.9
3,023,178 - Pf6N2E2_2565 0.26 +0.1
3,023,178 - Pf6N2E2_2565 0.26 -0.9
3,023,606 - Pf6N2E2_2565 0.71 -1.1
3,023,760 - Pf6N2E2_2565 0.88 -0.4
3,023,760 - Pf6N2E2_2565 0.88 +0.7
3,023,798 - -0.9
3,023,811 + +2.0
3,023,909 + +0.9
3,024,055 - Pf6N2E2_2566 0.19 +0.9
3,024,056 + Pf6N2E2_2566 0.19 -1.2
3,024,056 + Pf6N2E2_2566 0.19 +0.8
3,024,056 + Pf6N2E2_2566 0.19 -2.7
3,024,056 + Pf6N2E2_2566 0.19 +0.9
3,024,056 + Pf6N2E2_2566 0.19 +0.7
3,024,057 - Pf6N2E2_2566 0.19 -0.1
3,024,057 - Pf6N2E2_2566 0.19 +0.7
3,024,057 - Pf6N2E2_2566 0.19 -1.5
3,024,057 - Pf6N2E2_2566 0.19 +0.8
3,024,057 - Pf6N2E2_2566 0.19 +0.6
3,024,080 + Pf6N2E2_2566 0.22 +0.1
3,024,081 - Pf6N2E2_2566 0.22 +2.4
3,024,081 - Pf6N2E2_2566 0.22 -1.0
3,024,081 - Pf6N2E2_2566 0.22 +0.4
3,024,198 + Pf6N2E2_2566 0.37 -0.2
3,024,198 + Pf6N2E2_2566 0.37 +0.6
3,024,198 + Pf6N2E2_2566 0.37 +0.1
3,024,198 + Pf6N2E2_2566 0.37 -0.0
3,024,199 - Pf6N2E2_2566 0.37 +0.5
3,024,521 + Pf6N2E2_2566 0.77 -1.9
3,024,560 + Pf6N2E2_2566 0.82 +0.5
3,024,560 + Pf6N2E2_2566 0.82 +2.1
3,024,741 + -0.4
3,024,741 + -2.5
3,024,750 + +0.3
3,024,752 + -0.4
3,024,753 - +0.7
3,024,753 - +1.2
3,025,169 - Pf6N2E2_2567 0.47 +0.7
3,025,169 - Pf6N2E2_2567 0.47 -0.5
3,025,177 + Pf6N2E2_2567 0.48 +0.3
3,025,177 + Pf6N2E2_2567 0.48 +0.7
3,025,178 - Pf6N2E2_2567 0.48 +0.1
3,025,178 - Pf6N2E2_2567 0.48 -2.8
3,025,189 + Pf6N2E2_2567 0.50 -2.9
3,025,189 + Pf6N2E2_2567 0.50 -0.1
3,025,189 + Pf6N2E2_2567 0.50 -0.3
3,025,500 + Pf6N2E2_2567 0.85 -0.0
3,025,501 - Pf6N2E2_2567 0.85 +0.5
3,025,501 - Pf6N2E2_2567 0.85 -0.1
3,025,501 - Pf6N2E2_2567 0.85 +1.0
3,025,531 - Pf6N2E2_2567 0.88 +0.9
3,025,531 - Pf6N2E2_2567 0.88 -0.9
3,025,531 - Pf6N2E2_2567 0.88 +0.4
3,025,561 + +0.9
3,025,561 + -0.9
3,025,575 + -0.1

Or see this region's nucleotide sequence