Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2333

Experiment: Aluminum chloride 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2332 and Pf6N2E2_2333 are separated by 135 nucleotidesPf6N2E2_2333 and Pf6N2E2_2334 are separated by 258 nucleotides Pf6N2E2_2332 - DNA ligase (EC 6.5.1.2), at 2,758,304 to 2,760,661 _2332 Pf6N2E2_2333 - Cell division protein ZipA, at 2,760,797 to 2,761,642 _2333 Pf6N2E2_2334 - Chromosome partition protein smc, at 2,761,901 to 2,765,389 _2334 Position (kb) 2760 2761 2762Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2760.694 kb on - strandat 2760.715 kb on - strandat 2760.715 kb on - strandat 2760.715 kb on - strandat 2760.715 kb on - strandat 2760.715 kb on - strandat 2760.715 kb on - strandat 2760.715 kb on - strandat 2760.715 kb on - strandat 2760.715 kb on - strandat 2760.719 kb on - strandat 2760.719 kb on - strandat 2760.719 kb on - strandat 2760.719 kb on - strandat 2760.765 kb on - strandat 2760.765 kb on - strandat 2760.765 kb on - strandat 2761.686 kb on - strandat 2761.686 kb on - strandat 2761.686 kb on - strandat 2761.686 kb on - strandat 2761.754 kb on - strandat 2761.770 kb on - strandat 2761.775 kb on - strandat 2761.790 kb on - strandat 2761.796 kb on - strandat 2761.796 kb on - strandat 2761.866 kb on - strandat 2761.866 kb on - strandat 2761.866 kb on - strandat 2761.866 kb on - strandat 2761.866 kb on - strandat 2761.880 kb on - strandat 2761.880 kb on - strandat 2761.880 kb on - strandat 2761.880 kb on - strandat 2761.889 kb on - strandat 2761.977 kb on - strandat 2762.029 kb on - strandat 2762.082 kb on - strandat 2762.082 kb on - strandat 2762.265 kb on - strand, within Pf6N2E2_2334at 2762.356 kb on + strand, within Pf6N2E2_2334at 2762.481 kb on + strand, within Pf6N2E2_2334at 2762.611 kb on - strand, within Pf6N2E2_2334at 2762.611 kb on - strand, within Pf6N2E2_2334at 2762.624 kb on + strand, within Pf6N2E2_2334at 2762.625 kb on - strand, within Pf6N2E2_2334

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 4 mM
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2,760,694 - -0.5
2,760,715 - -1.5
2,760,715 - +1.4
2,760,715 - -1.2
2,760,715 - +0.3
2,760,715 - +0.0
2,760,715 - +0.8
2,760,715 - +0.9
2,760,715 - +0.3
2,760,715 - +1.6
2,760,719 - +0.7
2,760,719 - -1.6
2,760,719 - +0.7
2,760,719 - -1.0
2,760,765 - -0.8
2,760,765 - -0.7
2,760,765 - +1.2
2,761,686 - -0.9
2,761,686 - -2.1
2,761,686 - -0.6
2,761,686 - +1.8
2,761,754 - +0.4
2,761,770 - -2.1
2,761,775 - -0.6
2,761,790 - +0.6
2,761,796 - +0.2
2,761,796 - -0.9
2,761,866 - +1.6
2,761,866 - +0.3
2,761,866 - +0.3
2,761,866 - -2.4
2,761,866 - +1.2
2,761,880 - -1.7
2,761,880 - -0.1
2,761,880 - -0.3
2,761,880 - -0.2
2,761,889 - +0.8
2,761,977 - -1.0
2,762,029 - -3.0
2,762,082 - +1.0
2,762,082 - +0.5
2,762,265 - Pf6N2E2_2334 0.10 -2.1
2,762,356 + Pf6N2E2_2334 0.13 +1.0
2,762,481 + Pf6N2E2_2334 0.17 +1.2
2,762,611 - Pf6N2E2_2334 0.20 +0.3
2,762,611 - Pf6N2E2_2334 0.20 -0.7
2,762,624 + Pf6N2E2_2334 0.21 -2.2
2,762,625 - Pf6N2E2_2334 0.21 -0.1

Or see this region's nucleotide sequence